Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   H0N29_RS01600 Genome accession   NZ_CP059040
Coordinates   349368..349850 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344368..354850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N29_RS01590 (H0N29_01590) pilX 344671..345489 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H0N29_RS01595 (H0N29_01595) pilY1 345501..349355 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  H0N29_RS01600 (H0N29_01600) pilY2 349368..349850 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  H0N29_RS01605 (H0N29_01605) pilE 349847..350272 (+) 426 WP_000788344.1 type IV pilin protein Machinery gene
  H0N29_RS01610 (H0N29_01610) rpsP 350419..350670 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  H0N29_RS01615 (H0N29_01615) rimM 350690..351238 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  H0N29_RS01620 (H0N29_01620) trmD 351284..352024 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H0N29_RS01625 (H0N29_01625) rplS 352233..352601 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  H0N29_RS01630 (H0N29_01630) - 352654..353595 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  H0N29_RS01635 (H0N29_01635) - 353710..354741 (-) 1032 WP_001189454.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=466590 H0N29_RS01600 WP_001046417.1 349368..349850(+) (pilY2) [Acinetobacter baumannii strain ATCC 19606]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=466590 H0N29_RS01600 WP_001046417.1 349368..349850(+) (pilY2) [Acinetobacter baumannii strain ATCC 19606]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444