Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   H0N29_RS01605 Genome accession   NZ_CP059040
Coordinates   349847..350272 (+) Length   141 a.a.
NCBI ID   WP_000788344.1    Uniprot ID   A0A6F8TAJ0
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344847..355272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N29_RS01595 (H0N29_01595) pilY1 345501..349355 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  H0N29_RS01600 (H0N29_01600) pilY2 349368..349850 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  H0N29_RS01605 (H0N29_01605) pilE 349847..350272 (+) 426 WP_000788344.1 type IV pilin protein Machinery gene
  H0N29_RS01610 (H0N29_01610) rpsP 350419..350670 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  H0N29_RS01615 (H0N29_01615) rimM 350690..351238 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  H0N29_RS01620 (H0N29_01620) trmD 351284..352024 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H0N29_RS01625 (H0N29_01625) rplS 352233..352601 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  H0N29_RS01630 (H0N29_01630) - 352654..353595 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  H0N29_RS01635 (H0N29_01635) - 353710..354741 (-) 1032 WP_001189454.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15234.39 Da        Isoelectric Point: 7.1297

>NTDB_id=466591 H0N29_RS01605 WP_000788344.1 349847..350272(+) (pilE) [Acinetobacter baumannii strain ATCC 19606]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYSSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=466591 H0N29_RS01605 WP_000788344.1 349847..350272(+) (pilE) [Acinetobacter baumannii strain ATCC 19606]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATTCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TAJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.163

100

0.972
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518