Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JQM34_RS07540 Genome accession   NZ_CP069427
Coordinates   1587764..1588357 (+) Length   197 a.a.
NCBI ID   WP_200370739.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1582764..1593357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS07520 (JQM34_0001532) - 1583099..1583539 (-) 441 WP_200370735.1 LytTR family DNA-binding domain-containing protein -
  JQM34_RS07525 (JQM34_0001533) hexB 1583748..1585697 (+) 1950 WP_200370736.1 DNA mismatch repair endonuclease MutL Machinery gene
  JQM34_RS07530 (JQM34_0001534) - 1585849..1586349 (-) 501 WP_200370737.1 helix-turn-helix transcriptional regulator -
  JQM34_RS07535 (JQM34_0001535) - 1586519..1587751 (+) 1233 WP_200370738.1 MFS transporter -
  JQM34_RS07540 (JQM34_0001536) ruvA 1587764..1588357 (+) 594 WP_200370739.1 Holliday junction branch migration protein RuvA Machinery gene
  JQM34_RS07545 (JQM34_0001537) - 1588367..1588933 (+) 567 WP_200370741.1 DNA-3-methyladenine glycosylase I -
  JQM34_RS07550 (JQM34_0001538) - 1589013..1589276 (-) 264 WP_000166112.1 SemiSWEET family transporter -
  JQM34_RS07555 (JQM34_0001539) - 1589382..1590416 (-) 1035 WP_200370742.1 S66 peptidase family protein -
  JQM34_RS07560 (JQM34_0001540) - 1590684..1591031 (-) 348 WP_200370743.1 TfoX/Sxy family protein -
  JQM34_RS07565 (JQM34_0001542) - 1591047..1591724 (-) 678 WP_200370744.1 DUF1129 family protein -
  JQM34_RS07570 (JQM34_0001543) - 1591736..1592680 (-) 945 WP_000815620.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21758.20 Da        Isoelectric Point: 6.2573

>NTDB_id=466546 JQM34_RS07540 WP_200370739.1 1587764..1588357(+) (ruvA) [Streptococcus oralis strain SF100]
MYEYFKGIITKITAKYIVLEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPAKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=466546 JQM34_RS07540 WP_200370739.1 1587764..1588357(+) (ruvA) [Streptococcus oralis strain SF100]
ATGTACGAATATTTTAAAGGAATCATTACCAAAATCACTGCTAAATACATCGTCCTAGAAGCTAACGGTATCGGCTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTGAATCAAGAAACTCAGATTTATGTGCACCAAGTTGTCCGTG
AGGATGCCCATCTGCTTTACGGCTTTCGTTCAGAAGACGAGAAGAAGCTCTTTCTCAGCTTGATTTCGGTCTCAGGGATT
GGTCCTGTGTCAGCTCTTGCTATTATCGCTGCCGATGACAATGCTGGCTTGGTTCAGGCGATCGAGACTAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAACAGATGGTGCTGGACTTGGAAGGCAAGGTAGTCGTGG
CTAGTGATGACCTTCCTGCCAAGGTGGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCCATG
TTGGCACTGGGCTACAAGGCAACCGAGCTTAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGACACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAGATGTTGGTAAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

96.954

100

0.97
  ruvA Streptococcus pneumoniae R6

96.447

100

0.964
  ruvA Streptococcus pneumoniae D39

96.447

100

0.964
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.777

100

0.426