Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0E72_RS00975 Genome accession   NZ_CP059003
Coordinates   209266..209802 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 2D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 204266..214802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0E72_RS00955 (H0E72_00955) aphA 204554..205267 (+) 714 WP_001226928.1 acid phosphatase AphA -
  H0E72_RS00960 (H0E72_00960) yjbQ 205378..205794 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H0E72_RS00965 (H0E72_00965) yjbR 205798..206154 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  H0E72_RS00970 (H0E72_00970) uvrA 206189..209011 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  H0E72_RS00975 (H0E72_00975) ssb 209266..209802 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H0E72_RS00980 (H0E72_00980) yjcB 209901..210182 (-) 282 WP_001295689.1 YjcB family protein -
  H0E72_RS00985 (H0E72_00985) pdeC 210612..212198 (+) 1587 WP_000019514.1 c-di-GMP phosphodiesterase PdeC -
  H0E72_RS00990 (H0E72_00990) soxS 212201..212524 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  H0E72_RS00995 (H0E72_00995) soxR 212610..213074 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=466498 H0E72_RS00975 WP_000168305.1 209266..209802(+) (ssb) [Escherichia coli strain 2D]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=466498 H0E72_RS00975 WP_000168305.1 209266..209802(+) (ssb) [Escherichia coli strain 2D]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489