Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | MS7_RS03220 | Genome accession | NC_017351 |
| Coordinates | 653051..653521 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934800.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus subsp. aureus 11819-97 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 643674..686827 | 653051..653521 | within | 0 |
Gene organization within MGE regions
Location: 643674..686827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MS7_RS03150 (MS7_0584) | - | 643674..645050 (-) | 1377 | WP_000861314.1 | recombinase family protein | - |
| MS7_RS03155 (MS7_0585) | - | 645257..645937 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| MS7_RS03160 (MS7_0586) | - | 645973..646692 (-) | 720 | WP_000358224.1 | XRE family transcriptional regulator | - |
| MS7_RS03165 (MS7_0587) | - | 646834..647052 (+) | 219 | WP_001198672.1 | helix-turn-helix transcriptional regulator | - |
| MS7_RS03170 (MS7_0588) | - | 647068..647856 (+) | 789 | WP_001148566.1 | phage antirepressor KilAC domain-containing protein | - |
| MS7_RS03175 (MS7_0589) | - | 647873..648067 (+) | 195 | WP_000390105.1 | hypothetical protein | - |
| MS7_RS03180 | - | 648120..648323 (+) | 204 | Protein_589 | hypothetical protein | - |
| MS7_RS03185 (MS7_0590) | - | 648291..648536 (-) | 246 | WP_000122246.1 | hypothetical protein | - |
| MS7_RS03190 (MS7_0591) | - | 648690..648851 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| MS7_RS03195 (MS7_0592) | - | 648946..649206 (+) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| MS7_RS03200 | - | 649215..649478 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| MS7_RS03205 (MS7_0593) | - | 649487..651430 (+) | 1944 | WP_000700527.1 | AAA family ATPase | - |
| MS7_RS03210 (MS7_0594) | - | 651432..652352 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| MS7_RS03215 (MS7_0595) | - | 652433..653050 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| MS7_RS03220 (MS7_0596) | ssbA | 653051..653521 (+) | 471 | WP_000934800.1 | single-stranded DNA-binding protein | Machinery gene |
| MS7_RS03225 | - | 653551..654435 (+) | 885 | WP_000148312.1 | DnaD domain protein | - |
| MS7_RS03230 (MS7_0598) | - | 654442..654660 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| MS7_RS03235 (MS7_0599) | - | 654669..655073 (+) | 405 | WP_000401972.1 | RusA family crossover junction endodeoxyribonuclease | - |
| MS7_RS03240 (MS7_0600) | - | 655086..655457 (+) | 372 | WP_001140278.1 | SA1788 family PVL leukocidin-associated protein | - |
| MS7_RS03245 (MS7_0601) | - | 655458..655706 (+) | 249 | WP_001126832.1 | phi PVL orf 51-like protein | - |
| MS7_RS03250 (MS7_0602) | - | 655719..656120 (+) | 402 | WP_000695766.1 | hypothetical protein | - |
| MS7_RS03255 (MS7_0603) | - | 656117..656482 (+) | 366 | WP_001105616.1 | hypothetical protein | - |
| MS7_RS03260 (MS7_0604) | - | 656508..656729 (+) | 222 | WP_237708946.1 | DUF1024 family protein | - |
| MS7_RS03265 (MS7_0605) | - | 656716..656886 (+) | 171 | WP_000714407.1 | hypothetical protein | - |
| MS7_RS03270 (MS7_0606) | - | 656879..657415 (+) | 537 | WP_001066452.1 | dUTPase | - |
| MS7_RS03275 (MS7_0607) | - | 657452..657658 (+) | 207 | WP_000195779.1 | DUF1381 domain-containing protein | - |
| MS7_RS03280 (MS7_0608) | - | 657655..657849 (+) | 195 | WP_000132920.1 | hypothetical protein | - |
| MS7_RS03285 (MS7_0609) | - | 657846..658049 (+) | 204 | WP_001072795.1 | hypothetical protein | - |
| MS7_RS03290 (MS7_0610) | - | 658042..658278 (+) | 237 | WP_000608273.1 | hypothetical protein | - |
| MS7_RS03295 (MS7_0611) | - | 658271..658657 (+) | 387 | WP_000592236.1 | hypothetical protein | - |
| MS7_RS03300 (MS7_0612) | - | 658654..658827 (+) | 174 | WP_000595278.1 | transcriptional activator RinB | - |
| MS7_RS03305 (MS7_0613) | - | 658828..659193 (+) | 366 | WP_000455357.1 | hypothetical protein | - |
| MS7_RS03310 (MS7_0614) | - | 659194..659340 (+) | 147 | WP_000990005.1 | hypothetical protein | - |
| MS7_RS03315 (MS7_0615) | - | 659364..659786 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| MS7_RS03320 (MS7_0616) | - | 659973..660413 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| MS7_RS03325 (MS7_0617) | - | 660400..661677 (+) | 1278 | WP_000169946.1 | PBSX family phage terminase large subunit | - |
| MS7_RS03330 (MS7_0618) | - | 661688..663226 (+) | 1539 | WP_000921875.1 | phage portal protein | - |
| MS7_RS03335 (MS7_0619) | - | 663233..664228 (+) | 996 | WP_001668926.1 | minor capsid protein | - |
| MS7_RS03340 (MS7_0620) | - | 664301..664471 (+) | 171 | WP_000072202.1 | hypothetical protein | - |
| MS7_RS15640 | - | 664499..664592 (+) | 94 | Protein_622 | hypothetical protein | - |
| MS7_RS03345 (MS7_0621) | - | 664580..665200 (+) | 621 | WP_000392143.1 | DUF4355 domain-containing protein | - |
| MS7_RS03350 (MS7_0622) | - | 665214..666188 (+) | 975 | WP_000438513.1 | phage major capsid protein | - |
| MS7_RS03355 (MS7_0623) | - | 666210..666497 (+) | 288 | WP_001114085.1 | hypothetical protein | - |
| MS7_RS03360 (MS7_0624) | - | 666506..666838 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| MS7_RS03365 | - | 666835..667137 (+) | 303 | WP_001268313.1 | hypothetical protein | - |
| MS7_RS03370 (MS7_0625) | - | 667137..667484 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| MS7_RS03375 (MS7_0626) | - | 667496..667879 (+) | 384 | WP_000188649.1 | hypothetical protein | - |
| MS7_RS03380 (MS7_0627) | - | 667898..668479 (+) | 582 | WP_000002578.1 | phage major tail protein, TP901-1 family | - |
| MS7_RS03385 (MS7_0628) | - | 668542..668907 (+) | 366 | WP_001100163.1 | tail assembly chaperone | - |
| MS7_RS03390 (MS7_0629) | - | 668937..669281 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| MS7_RS03395 (MS7_0630) | - | 669298..672762 (+) | 3465 | WP_000141466.1 | hypothetical protein | - |
| MS7_RS03400 (MS7_0631) | - | 672775..673722 (+) | 948 | WP_000350680.1 | phage tail family protein | - |
| MS7_RS03405 (MS7_0632) | - | 673731..675632 (+) | 1902 | WP_000152714.1 | SGNH/GDSL hydrolase family protein | - |
| MS7_RS03410 (MS7_0633) | - | 675647..677557 (+) | 1911 | WP_000369012.1 | hypothetical protein | - |
| MS7_RS03415 (MS7_0634) | - | 677557..679380 (+) | 1824 | WP_000259632.1 | BppU family phage baseplate upper protein | - |
| MS7_RS03420 (MS7_0635) | - | 679380..679757 (+) | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| MS7_RS03425 (MS7_0636) | - | 679761..679934 (+) | 174 | WP_000782200.1 | XkdX family protein | - |
| MS7_RS03430 (MS7_0637) | - | 679974..680273 (+) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| MS7_RS03435 (MS7_0638) | - | 680410..682308 (+) | 1899 | WP_000524022.1 | glucosaminidase domain-containing protein | - |
| MS7_RS03440 (MS7_0639) | - | 682321..683559 (+) | 1239 | WP_000276650.1 | BppU family phage baseplate upper protein | - |
| MS7_RS03445 (MS7_0640) | - | 683564..683959 (+) | 396 | WP_000387943.1 | hypothetical protein | - |
| MS7_RS03450 (MS7_0641) | - | 684014..684451 (+) | 438 | WP_000354128.1 | phage holin | - |
| MS7_RS03455 (MS7_0642) | - | 684432..685877 (+) | 1446 | WP_001148134.1 | SH3 domain-containing protein | - |
| MS7_RS03460 (MS7_0643) | - | 686406..686612 (+) | 207 | WP_000125171.1 | hypothetical protein | - |
| MS7_RS03465 (MS7_0644) | - | 686627..686827 (+) | 201 | WP_000498229.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17668.41 Da Isoelectric Point: 4.6228
>NTDB_id=46631 MS7_RS03220 WP_000934800.1 653051..653521(+) (ssbA) [Staphylococcus aureus subsp. aureus 11819-97]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=46631 MS7_RS03220 WP_000934800.1 653051..653521(+) (ssbA) [Staphylococcus aureus subsp. aureus 11819-97]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.582 |
100 |
0.699 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.577 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
67.949 |
0.397 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |