Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GZH31_RS14290 Genome accession   NZ_CP058972
Coordinates   3167176..3167868 (-) Length   230 a.a.
NCBI ID   WP_180311143.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. JSTW     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3162176..3172868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH31_RS14280 (GZH31_14280) - 3164262..3165158 (+) 897 WP_180311141.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -
  GZH31_RS14285 (GZH31_14285) - 3165155..3166852 (-) 1698 WP_180311142.1 EAL domain-containing protein -
  GZH31_RS14290 (GZH31_14290) ssb 3167176..3167868 (-) 693 WP_180311143.1 single-stranded DNA-binding protein Machinery gene
  GZH31_RS14295 (GZH31_14295) - 3167888..3169255 (-) 1368 WP_036973178.1 MFS transporter -
  GZH31_RS14300 (GZH31_14300) uvrA 3169419..3172238 (+) 2820 WP_074989346.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24626.87 Da        Isoelectric Point: 5.2439

>NTDB_id=466264 GZH31_RS14290 WP_180311143.1 3167176..3167868(-) (ssb) [Pseudoalteromonas sp. JSTW]
MARGVNKVILVGNLGQDPEVRYMPNGNGVANISIATTDSWKDKNTGQMQERTEWHRVVLFGKLAEVAGEYLRKGSQVYIE
GRLQTRKWTDQSGQEKFTTEIVVDMGGQMQMLGGRGGDQQGGGYQGGQSQGGYQGGQQQGGGYGGGSQQAQSNSYAPQQQ
PAPAPAQQQRPQQQPAPAPQQNNNQYGGYGQQQSSAPQQGGFAPKPQNAPQGGASNPMEPPIDFDDDIPF

Nucleotide


Download         Length: 693 bp        

>NTDB_id=466264 GZH31_RS14290 WP_180311143.1 3167176..3167868(-) (ssb) [Pseudoalteromonas sp. JSTW]
ATGGCACGCGGTGTGAACAAAGTAATCTTGGTTGGTAATTTAGGCCAAGATCCAGAAGTACGTTATATGCCTAATGGCAA
TGGTGTAGCGAATATCAGCATTGCTACGACTGACAGCTGGAAAGATAAAAACACAGGGCAAATGCAAGAGCGTACAGAAT
GGCACCGTGTTGTTTTATTTGGCAAGCTAGCTGAAGTAGCGGGTGAGTACCTTCGTAAAGGTTCACAAGTTTATATTGAG
GGTCGTTTACAAACACGTAAGTGGACTGATCAATCTGGCCAAGAAAAATTTACCACTGAAATCGTGGTAGACATGGGCGG
TCAAATGCAAATGTTAGGTGGCCGTGGTGGCGACCAACAGGGTGGTGGTTATCAAGGTGGCCAATCACAAGGCGGTTACC
AAGGTGGTCAACAACAAGGTGGCGGCTATGGTGGCGGTTCGCAGCAAGCGCAAAGCAACAGCTATGCACCTCAGCAGCAG
CCAGCACCGGCGCCAGCACAACAACAGCGCCCACAACAACAGCCTGCACCTGCACCGCAGCAAAATAACAACCAATACGG
TGGTTATGGCCAACAGCAAAGCAGCGCACCACAGCAAGGTGGTTTTGCTCCTAAGCCACAAAATGCACCGCAAGGTGGCG
CATCAAACCCAATGGAACCACCAATCGATTTTGACGACGATATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.913

100

0.539
  ssb Neisseria gonorrhoeae MS11

42.609

100

0.426
  ssb Neisseria meningitidis MC58

41.048

99.565

0.409
  ssb Glaesserella parasuis strain SC1401

51.685

77.391

0.4