Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0A34_RS02550 Genome accession   NZ_CP058958
Coordinates   592722..593243 (+) Length   173 a.a.
NCBI ID   WP_094961402.1    Uniprot ID   -
Organism   Providencia rettgeri strain G0519     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 587722..598243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A34_RS02540 (H0A34_02540) - 587752..588948 (+) 1197 WP_036958319.1 amino acid aminotransferase -
  H0A34_RS02545 (H0A34_02545) uvrA 589029..591863 (-) 2835 WP_004260897.1 excinuclease ABC subunit UvrA -
  H0A34_RS02550 (H0A34_02550) ssb 592722..593243 (+) 522 WP_094961402.1 single-stranded DNA-binding protein Machinery gene
  H0A34_RS02555 (H0A34_02555) - 593528..593935 (-) 408 WP_004260890.1 helix-turn-helix domain-containing protein -
  H0A34_RS02560 (H0A34_02560) - 594178..595350 (-) 1173 WP_180312347.1 MFS transporter -
  H0A34_RS02565 (H0A34_02565) ivbL 595682..595771 (+) 90 WP_180312643.1 ilvB operon leader peptide IvbL -
  H0A34_RS02570 (H0A34_02570) ilvB 595875..597572 (+) 1698 WP_094961401.1 acetolactate synthase large subunit -
  H0A34_RS02575 (H0A34_02575) ilvN 597575..597859 (+) 285 WP_004260877.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18525.53 Da        Isoelectric Point: 4.9468

>NTDB_id=466172 H0A34_RS02550 WP_094961402.1 592722..593243(+) (ssb) [Providencia rettgeri strain G0519]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAASQGQGGQGGWGQPQQPQAAQQFSGGGAPAARSSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=466172 H0A34_RS02550 WP_094961402.1 592722..593243(+) (ssb) [Providencia rettgeri strain G0519]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCAGGTGAATACCTGAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACACGACAGAAGTTGTTGTGAATATCGG
CGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCAGCATCACAAGGTCAAGGCGGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCGCAAGCAGCACAGCAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCATCAGCGCCTGCTCCACAGACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.624
  ssb Neisseria meningitidis MC58

47.458

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.486