Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZU75_RS04015 Genome accession   NZ_CP058952
Coordinates   860476..860994 (-) Length   172 a.a.
NCBI ID   WP_180307893.1    Uniprot ID   A0A7D5V8J8
Organism   Chitinibacter fontanus strain STM-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 855476..865994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZU75_RS03960 (HZU75_03960) - 855728..856177 (-) 450 WP_180307888.1 multidrug/biocide efflux PACE transporter -
  HZU75_RS03965 (HZU75_03965) - 856280..857161 (+) 882 WP_180307889.1 LysR family transcriptional regulator -
  HZU75_RS03970 (HZU75_03970) - 857257..858294 (-) 1038 WP_180307890.1 hypothetical protein -
  HZU75_RS03975 (HZU75_03975) nadA 858466..859380 (-) 915 WP_180307891.1 quinolinate synthase NadA -
  HZU75_RS03980 (HZU75_03980) - 859401..859604 (-) 204 WP_180307892.1 hypothetical protein -
  HZU75_RS04015 (HZU75_04015) ssb 860476..860994 (-) 519 WP_180307893.1 single-stranded DNA-binding protein Machinery gene
  HZU75_RS04020 (HZU75_04020) - 860995..862359 (-) 1365 WP_180308723.1 MFS transporter -
  HZU75_RS04025 (HZU75_04025) - 863003..863530 (+) 528 WP_180307894.1 GspH/FimT family pseudopilin -
  HZU75_RS04030 (HZU75_04030) pilV 863540..864190 (+) 651 WP_180307895.1 type IV pilus modification protein PilV -
  HZU75_RS04035 (HZU75_04035) - 864201..864980 (+) 780 WP_180307896.1 PilW family protein -
  HZU75_RS04040 (HZU75_04040) - 864991..865518 (+) 528 WP_180307897.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18587.65 Da        Isoelectric Point: 5.3108

>NTDB_id=466130 HZU75_RS04015 WP_180307893.1 860476..860994(-) (ssb) [Chitinibacter fontanus strain STM-7]
MASLNKVLLIGNLGKDPESRFLPSGGAVCNFSIATTESWKDKNTGSKQEKTEWHNITMYGRLAEIAGEYLKKGSQVYIEG
RLQTRKWQDKQTGADRYTTEIIADEMKMLGGRGGMGGGMGGGSQGGQGGYGGDDFNQEYSAPQAPRQAPQAAPQPAARPA
KSFDDFEDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=466130 HZU75_RS04015 WP_180307893.1 860476..860994(-) (ssb) [Chitinibacter fontanus strain STM-7]
ATGGCATCGTTAAACAAAGTGTTGCTGATCGGCAATTTGGGCAAAGACCCTGAATCTCGTTTCTTACCGAGCGGTGGCGC
GGTGTGCAATTTTTCAATTGCCACCACCGAGAGCTGGAAAGACAAAAACACGGGCTCCAAACAAGAAAAAACCGAATGGC
ACAACATCACGATGTACGGCCGTTTGGCTGAAATCGCCGGTGAATACCTGAAAAAAGGCAGCCAAGTGTATATCGAAGGC
CGTCTGCAAACGCGCAAATGGCAAGATAAACAAACCGGCGCAGATCGCTATACGACCGAAATTATCGCCGATGAAATGAA
AATGCTCGGCGGTCGTGGTGGTATGGGGGGCGGCATGGGCGGCGGTTCACAAGGCGGCCAAGGCGGCTACGGCGGTGATG
ATTTCAATCAAGAATACAGCGCGCCACAAGCCCCACGCCAAGCGCCACAAGCAGCACCACAGCCTGCTGCGCGCCCAGCG
AAGAGCTTTGATGATTTTGAGGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5V8J8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.495

100

0.587
  ssb Neisseria meningitidis MC58

52.809

100

0.547
  ssb Neisseria gonorrhoeae MS11

52.809

100

0.547
  ssb Glaesserella parasuis strain SC1401

50

100

0.535