Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   HZ310_RS07640 Genome accession   NZ_CP058951
Coordinates   1460093..1460386 (+) Length   97 a.a.
NCBI ID   WP_169056994.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455093..1465386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS07610 (HZ310_07610) - 1455876..1456118 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  HZ310_RS07615 (HZ310_07615) - 1456332..1456712 (+) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  HZ310_RS07625 (HZ310_07625) - 1456936..1457808 (+) 873 WP_180310520.1 STAS domain-containing protein -
  HZ310_RS07630 (HZ310_07630) comGA 1457985..1459055 (+) 1071 WP_257474620.1 competence type IV pilus ATPase ComGA Machinery gene
  HZ310_RS07635 (HZ310_07635) comGB 1459036..1460076 (+) 1041 WP_180310521.1 competence type IV pilus assembly protein ComGB -
  HZ310_RS07640 (HZ310_07640) comGC 1460093..1460386 (+) 294 WP_169056994.1 competence type IV pilus major pilin ComGC Machinery gene
  HZ310_RS07645 (HZ310_07645) comGD 1460379..1460825 (+) 447 WP_180310522.1 competence type IV pilus minor pilin ComGD -
  HZ310_RS19940 comGE 1460809..1461126 (+) 318 WP_257474621.1 competence type IV pilus minor pilin ComGE -
  HZ310_RS07650 (HZ310_07650) comGF 1461035..1461565 (+) 531 WP_257474622.1 competence type IV pilus minor pilin ComGF -
  HZ310_RS07655 (HZ310_07655) - 1461562..1461945 (+) 384 WP_058014684.1 competence type IV pilus minor pilin ComGG -
  HZ310_RS07660 (HZ310_07660) - 1462005..1462199 (+) 195 WP_044140973.1 YqzE family protein -
  HZ310_RS07665 (HZ310_07665) - 1462233..1462511 (-) 279 WP_234034921.1 DUF3889 domain-containing protein -
  HZ310_RS07670 (HZ310_07670) tapA 1462811..1463338 (+) 528 WP_180310523.1 amyloid fiber anchoring/assembly protein TapA -
  HZ310_RS07675 (HZ310_07675) sipW 1463391..1463963 (+) 573 WP_180310524.1 signal peptidase I SipW -
  HZ310_RS07680 (HZ310_07680) tasA 1464021..1464821 (+) 801 WP_144462730.1 biofilm matrix protein TasA -
  HZ310_RS07685 (HZ310_07685) sinR 1464889..1465224 (-) 336 WP_106049802.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10767.74 Da        Isoelectric Point: 7.3837

>NTDB_id=466087 HZ310_RS07640 WP_169056994.1 1460093..1460386(+) (comGC) [Bacillus pumilus strain UAMX]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKVIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=466087 HZ310_RS07640 WP_169056994.1 1460093..1460386(+) (comGC) [Bacillus pumilus strain UAMX]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCAATTCTTTTACTGATTACCATTCC
GAATATCACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACACAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAGGGCTATGTCAAAAAGGGATTAACG
TGTCCTAATGGAAAAGTCATTGTCATTCAAAATGGACATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392