Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HZ310_RS07685 Genome accession   NZ_CP058951
Coordinates   1464889..1465224 (-) Length   111 a.a.
NCBI ID   WP_106049802.1    Uniprot ID   A0AAD0HNL7
Organism   Bacillus pumilus strain UAMX     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459889..1470224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS07640 (HZ310_07640) comGC 1460093..1460386 (+) 294 WP_169056994.1 competence type IV pilus major pilin ComGC Machinery gene
  HZ310_RS07645 (HZ310_07645) comGD 1460379..1460825 (+) 447 WP_180310522.1 competence type IV pilus minor pilin ComGD -
  HZ310_RS19940 comGE 1460809..1461126 (+) 318 WP_257474621.1 competence type IV pilus minor pilin ComGE -
  HZ310_RS07650 (HZ310_07650) comGF 1461035..1461565 (+) 531 WP_257474622.1 competence type IV pilus minor pilin ComGF -
  HZ310_RS07655 (HZ310_07655) - 1461562..1461945 (+) 384 WP_058014684.1 competence type IV pilus minor pilin ComGG -
  HZ310_RS07660 (HZ310_07660) - 1462005..1462199 (+) 195 WP_044140973.1 YqzE family protein -
  HZ310_RS07665 (HZ310_07665) - 1462233..1462511 (-) 279 WP_234034921.1 DUF3889 domain-containing protein -
  HZ310_RS07670 (HZ310_07670) tapA 1462811..1463338 (+) 528 WP_180310523.1 amyloid fiber anchoring/assembly protein TapA -
  HZ310_RS07675 (HZ310_07675) sipW 1463391..1463963 (+) 573 WP_180310524.1 signal peptidase I SipW -
  HZ310_RS07680 (HZ310_07680) tasA 1464021..1464821 (+) 801 WP_144462730.1 biofilm matrix protein TasA -
  HZ310_RS07685 (HZ310_07685) sinR 1464889..1465224 (-) 336 WP_106049802.1 transcriptional regulator SinR Regulator
  HZ310_RS07690 (HZ310_07690) - 1465258..1465422 (-) 165 WP_003217357.1 anti-repressor SinI family protein -
  HZ310_RS07695 (HZ310_07695) - 1465605..1466402 (-) 798 WP_180310525.1 YqhG family protein -
  HZ310_RS07700 (HZ310_07700) - 1466417..1468087 (-) 1671 WP_180310526.1 DEAD/DEAH box helicase -
  HZ310_RS07705 (HZ310_07705) gcvT 1468649..1469746 (+) 1098 WP_180310527.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12973.58 Da        Isoelectric Point: 5.2831

>NTDB_id=466088 HZ310_RS07685 WP_106049802.1 1464889..1465224(-) (sinR) [Bacillus pumilus strain UAMX]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=466088 HZ310_RS07685 WP_106049802.1 1464889..1465224(-) (sinR) [Bacillus pumilus strain UAMX]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937