Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   HZ310_RS07630 Genome accession   NZ_CP058951
Coordinates   1457985..1459055 (+) Length   356 a.a.
NCBI ID   WP_257474620.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1452985..1464055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS07590 (HZ310_07590) - 1452992..1453306 (+) 315 WP_034662003.1 MTH1187 family thiamine-binding protein -
  HZ310_RS07595 (HZ310_07595) - 1453331..1453504 (-) 174 WP_003217333.1 DUF2759 domain-containing protein -
  HZ310_RS07600 (HZ310_07600) - 1453662..1454300 (+) 639 WP_180310519.1 MBL fold metallo-hydrolase -
  HZ310_RS07605 (HZ310_07605) - 1454416..1455771 (-) 1356 WP_180309087.1 IS1182 family transposase -
  HZ310_RS07610 (HZ310_07610) - 1455876..1456118 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  HZ310_RS07615 (HZ310_07615) - 1456332..1456712 (+) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  HZ310_RS07625 (HZ310_07625) - 1456936..1457808 (+) 873 WP_180310520.1 STAS domain-containing protein -
  HZ310_RS07630 (HZ310_07630) comGA 1457985..1459055 (+) 1071 WP_257474620.1 competence type IV pilus ATPase ComGA Machinery gene
  HZ310_RS07635 (HZ310_07635) comGB 1459036..1460076 (+) 1041 WP_180310521.1 competence type IV pilus assembly protein ComGB -
  HZ310_RS07640 (HZ310_07640) comGC 1460093..1460386 (+) 294 WP_169056994.1 competence type IV pilus major pilin ComGC Machinery gene
  HZ310_RS07645 (HZ310_07645) comGD 1460379..1460825 (+) 447 WP_180310522.1 competence type IV pilus minor pilin ComGD -
  HZ310_RS19940 comGE 1460809..1461126 (+) 318 WP_257474621.1 competence type IV pilus minor pilin ComGE -
  HZ310_RS07650 (HZ310_07650) comGF 1461035..1461565 (+) 531 WP_257474622.1 competence type IV pilus minor pilin ComGF -
  HZ310_RS07655 (HZ310_07655) - 1461562..1461945 (+) 384 WP_058014684.1 competence type IV pilus minor pilin ComGG -
  HZ310_RS07660 (HZ310_07660) - 1462005..1462199 (+) 195 WP_044140973.1 YqzE family protein -
  HZ310_RS07665 (HZ310_07665) - 1462233..1462511 (-) 279 WP_234034921.1 DUF3889 domain-containing protein -
  HZ310_RS07670 (HZ310_07670) tapA 1462811..1463338 (+) 528 WP_180310523.1 amyloid fiber anchoring/assembly protein TapA -
  HZ310_RS07675 (HZ310_07675) sipW 1463391..1463963 (+) 573 WP_180310524.1 signal peptidase I SipW -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40334.72 Da        Isoelectric Point: 9.2484

>NTDB_id=466086 HZ310_RS07630 WP_257474620.1 1457985..1459055(+) (comGA) [Bacillus pumilus strain UAMX]
MYGIEYLGQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRRGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASTRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVLSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGETCQLYCKLNRPVRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=466086 HZ310_RS07630 WP_257474620.1 1457985..1459055(+) (comGA) [Bacillus pumilus strain UAMX]
TTGTATGGGATTGAATATTTGGGACAAGAGCTGCTAGAAGAAGCATGCCGTATGAGGGCATCTGATGTGCATATTGTCCC
AAAAGAAAAGGAAGCGTCTGTATCTTTCCGAGTAGACTCAGATTTAATTCAGCAGCGAACCATTGATAAAAAAAGCGGCG
AGCGGCTCATTGCTCATTTTAAATTTTTATCGTCCATGGATATCGGAGAAAAACGGAGACCGCAAAATGGGTCGCTAGCT
GTGATGCTGAGAAGAGGACAGGTGTTTATTCGAATGTCTACCTTACCAACTGTAAATGATGAAAGTTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCGAAAATAAAACATCTGTCACTATTTCCGAAAGCCTCTACTCGATTATTGTCGTTTTTGA
ATCATTCGCATGGGCTCATTTTATTTACCGGTCCAACCAATTCAGGCAAAACAACGACCCTCTATTCATTGATCCAGTTC
GCAAAAAAGAATTTCAACCGAAATATAATTACACTTGAAGATCCAGTGGAAACAAGAAATGAAGAAGTGTTACAGGTTCA
AGTAAATGAAAAAGCCGGTATCACATATGCCGCAGGATTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCTCGAACGGCAATTAGAGCAGCACTAACAGGCCATTTAGTGTTGAGTACACTACAT
GCGAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGGTGTCACGATGAATGAACTCGAACAAACGATGGTTGC
GATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAACATGCCAGCTTTACTGTAAATTAAATCGTC
CGGTCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAGGAGCTCGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTAGGCTATTTATCGAAAAACACCTATCA
TCGCTGGGTTTATGAAGAAGCAAGCCTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.689

99.438

0.643