Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HXV88_RS19945 Genome accession   NZ_CP058912
Coordinates   4305877..4306464 (+) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain JC529     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4300877..4311464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXV88_RS19920 (HXV88_19920) - 4302390..4302911 (-) 522 WP_179902676.1 curlin -
  HXV88_RS19925 (HXV88_19925) - 4303100..4303939 (-) 840 WP_005355003.1 CsgG/HfaB family protein -
  HXV88_RS19930 (HXV88_19930) - 4303947..4304348 (-) 402 WP_150389798.1 curli assembly protein CsgF -
  HXV88_RS19935 (HXV88_19935) - 4304360..4304803 (-) 444 WP_052447194.1 curli production assembly/transport protein CsgE -
  HXV88_RS19940 (HXV88_19940) - 4304803..4305450 (-) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  HXV88_RS19945 (HXV88_19945) ssb 4305877..4306464 (+) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  HXV88_RS19950 (HXV88_19950) - 4306614..4307357 (+) 744 WP_235675079.1 ABC transporter substrate-binding protein -
  HXV88_RS22810 - 4307430..4307555 (-) 126 WP_019445191.1 hypothetical protein -
  HXV88_RS19955 (HXV88_19955) - 4308017..4308919 (+) 903 WP_179902678.1 cation diffusion facilitator family transporter -
  HXV88_RS19960 (HXV88_19960) yjbD 4309066..4309350 (+) 285 WP_005340165.1 DUF3811 domain-containing protein -
  HXV88_RS19965 (HXV88_19965) cspA 4309946..4310158 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=465969 HXV88_RS19945 WP_005340181.1 4305877..4306464(+) (ssb) [Aeromonas veronii strain JC529]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=465969 HXV88_RS19945 WP_005340181.1 4305877..4306464(+) (ssb) [Aeromonas veronii strain JC529]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAAGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AATATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456