Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HU825_RS07975 Genome accession   NZ_CP058908
Coordinates   1680336..1680833 (+) Length   165 a.a.
NCBI ID   WP_043298094.1    Uniprot ID   -
Organism   Pseudomonas phenolilytica strain RBPA9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1675336..1685833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU825_RS07965 (HU825_07960) uvrA 1675819..1678662 (-) 2844 WP_234303248.1 excinuclease ABC subunit UvrA -
  HU825_RS07970 (HU825_07965) - 1678793..1680160 (+) 1368 WP_043298095.1 MFS transporter -
  HU825_RS07975 (HU825_07970) ssb 1680336..1680833 (+) 498 WP_043298094.1 single-stranded DNA-binding protein Machinery gene
  HU825_RS07980 (HU825_07975) - 1680844..1681728 (+) 885 WP_043298093.1 sugar nucleotide-binding protein -
  HU825_RS07985 (HU825_07980) - 1681721..1682650 (+) 930 WP_077682535.1 NAD-dependent epimerase/dehydratase family protein -
  HU825_RS07990 (HU825_07985) - 1682720..1683394 (-) 675 WP_054093417.1 OmpW family outer membrane protein -
  HU825_RS07995 (HU825_07990) - 1683577..1684356 (+) 780 WP_234303249.1 DUF3450 domain-containing protein -
  HU825_RS08000 (HU825_07995) - 1684353..1685699 (+) 1347 WP_234303250.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18466.52 Da        Isoelectric Point: 5.9492

>NTDB_id=465930 HU825_RS07975 WP_043298094.1 1680336..1680833(+) (ssb) [Pseudomonas phenolilytica strain RBPA9]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEVVVDMNGSMQLLGGRGGSSDDAPRQPRPQREPQQQAPRAQAQPQQPRPATQQPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=465930 HU825_RS07975 WP_043298094.1 1680336..1680833(+) (ssb) [Pseudomonas phenolilytica strain RBPA9]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGTGATCCGGAAACCCGCTACCTGCCCAACGGCAA
TGCGGTAACCAACATTACCCTGGCCACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGTTGCAGGAGCGTACCGAGT
GGCATCGCGTCGTGCTGTTCGGCAAGGTCGCCGAGATTGCCGGTGAGTACCTGCGCAAGGGCTCGCAATGCTACATCGAG
GGCCGCTTGCAGACCCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTACACCACCGAGGTTGTAGTGGACATGAACGGCAG
CATGCAGCTGCTCGGCGGTCGTGGCGGCAGCTCCGATGATGCCCCGCGCCAGCCGCGTCCGCAGCGTGAGCCCCAGCAGC
AGGCACCGCGCGCCCAGGCTCAGCCGCAGCAGCCGCGTCCGGCCACGCAACAGCCGGCACCGGACTACGACAGCTTCGAC
GACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.191

100

0.612
  ssb Glaesserella parasuis strain SC1401

45.251

100

0.491
  ssb Neisseria gonorrhoeae MS11

44.318

100

0.473
  ssb Neisseria meningitidis MC58

43.75

100

0.467