Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZF03_RS14185 Genome accession   NZ_CP058907
Coordinates   3101510..3102013 (-) Length   167 a.a.
NCBI ID   WP_011158365.1    Uniprot ID   Q6N604
Organism   Rhodopseudomonas palustris strain CGMCC 1.2180     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3096510..3107013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZF03_RS14160 (HZF03_14155) - 3096633..3097925 (-) 1293 WP_119018758.1 serine hydrolase domain-containing protein -
  HZF03_RS14165 (HZF03_14160) queC 3098007..3098720 (-) 714 WP_119018759.1 7-cyano-7-deazaguanine synthase QueC -
  HZF03_RS14170 (HZF03_14165) mazG 3098837..3099661 (+) 825 WP_119018760.1 nucleoside triphosphate pyrophosphohydrolase -
  HZF03_RS14175 (HZF03_14170) - 3099740..3101035 (+) 1296 WP_119018761.1 hemolysin family protein -
  HZF03_RS14180 (HZF03_14175) - 3101032..3101394 (+) 363 WP_119018762.1 hypothetical protein -
  HZF03_RS14185 (HZF03_14180) ssb 3101510..3102013 (-) 504 WP_011158365.1 single-stranded DNA-binding protein Machinery gene
  HZF03_RS14190 (HZF03_14185) - 3102551..3103306 (+) 756 WP_119017206.1 outer membrane protein -
  HZF03_RS14195 (HZF03_14190) uvrA 3103614..3106631 (+) 3018 WP_119017205.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17827.64 Da        Isoelectric Point: 6.9869

>NTDB_id=465912 HZF03_RS14185 WP_011158365.1 3101510..3102013(-) (ssb) [Rhodopseudomonas palustris strain CGMCC 1.2180]
MAGSVNKVILVGNLGADPEIKRTQDGRPIANLRIATSESWRDRATGERKEKTEWHRVVIFNEGLCKVAEQYLRKGAKVYI
EGQLQTRKWTDQSGAERYSTEVVLQNFNSNLTMLDGRSGGGGGGGYGDDNSGGDFGSSGPSGGGGARRPMPASSGGGRSD
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=465912 HZF03_RS14185 WP_011158365.1 3101510..3102013(-) (ssb) [Rhodopseudomonas palustris strain CGMCC 1.2180]
ATGGCGGGTAGCGTGAACAAGGTGATCCTGGTCGGGAATCTCGGTGCCGATCCGGAGATCAAGCGGACCCAGGATGGGCG
TCCGATTGCGAACCTGCGGATCGCCACCTCGGAGTCCTGGCGCGATCGCGCCACCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTGGTGATCTTCAATGAGGGATTGTGCAAGGTCGCCGAGCAGTACCTGAGAAAAGGCGCGAAGGTTTACATC
GAAGGCCAGCTGCAGACACGCAAATGGACCGATCAGAGCGGCGCTGAGCGCTACAGCACCGAGGTGGTGCTGCAGAACTT
CAACTCGAATCTGACCATGCTCGACGGCCGCAGCGGCGGCGGAGGTGGCGGCGGCTATGGCGACGACAACTCCGGCGGCG
ATTTCGGCTCCAGCGGCCCCTCGGGTGGCGGCGGCGCACGGCGGCCGATGCCGGCCAGCAGCGGCGGCGGCCGCAGCGAT
ATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6N604

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.757

100

0.557
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.539
  ssb Neisseria meningitidis MC58

37.43

100

0.401
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.401