Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZT25_RS06595 Genome accession   NZ_CP058886
Coordinates   1360196..1360711 (-) Length   171 a.a.
NCBI ID   WP_000168264.1    Uniprot ID   A0A7L5X6G7
Organism   Shigella flexneri strain STLEFF_33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1355196..1365711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT25_RS06545 (HZT25_06520) torI 1356093..1356293 (-) 201 WP_001163428.1 response regulator inhibitor TorI -
  HZT25_RS06550 (HZT25_06525) - 1356402..1356701 (-) 300 WP_001447403.1 hypothetical protein -
  HZT25_RS06555 (HZT25_06530) - 1356859..1357137 (-) 279 WP_001388117.1 DUF4752 family protein -
  HZT25_RS06560 (HZT25_06535) - 1357137..1357754 (-) 618 WP_240763776.1 DUF551 domain-containing protein -
  HZT25_RS06565 (HZT25_06540) - 1357751..1358266 (-) 516 WP_240763778.1 hypothetical protein -
  HZT25_RS06570 (HZT25_06545) - 1358271..1358891 (-) 621 WP_240763780.1 ead/Ea22-like family protein -
  HZT25_RS06575 (HZT25_06550) - 1358888..1359250 (-) 363 WP_240763782.1 hypothetical protein -
  HZT25_RS06580 (HZT25_06555) - 1359247..1359714 (-) 468 WP_240763783.1 hypothetical protein -
  HZT25_RS06585 (HZT25_06560) - 1359711..1359875 (-) 165 WP_001214456.1 DUF2737 family protein -
  HZT25_RS06590 (HZT25_06565) - 1359886..1360182 (-) 297 WP_001111285.1 phage anti-RecBCD protein -
  HZT25_RS06595 (HZT25_06570) ssb 1360196..1360711 (-) 516 WP_000168264.1 single-stranded DNA-binding protein Machinery gene
  HZT25_RS06600 (HZT25_06575) - 1360712..1361419 (-) 708 WP_001296878.1 Rad52/Rad22 family DNA repair protein -
  HZT25_RS06605 (HZT25_06580) - 1361428..1361598 (-) 171 WP_000050554.1 hypothetical protein -
  HZT25_RS06610 (HZT25_06585) kil 1361674..1361826 (-) 153 WP_001243355.1 host cell division inhibitory peptide Kil -
  HZT25_RS06615 (HZT25_06590) - 1361811..1361942 (-) 132 WP_032174193.1 protease FtsH-inhibitory lysogeny factor CIII -
  HZT25_RS06620 (HZT25_06595) - 1361967..1362935 (-) 969 WP_240763784.1 cell envelope biogenesis protein TolA -
  HZT25_RS06625 (HZT25_06600) - 1363070..1363258 (-) 189 WP_000865175.1 hypothetical protein -
  HZT25_RS06630 (HZT25_06605) - 1363258..1363554 (-) 297 WP_000394578.1 hypothetical protein -
  HZT25_RS06635 (HZT25_06610) - 1363594..1363845 (-) 252 WP_000394305.1 hypothetical protein -
  HZT25_RS06640 (HZT25_06615) - 1363854..1364159 (-) 306 WP_240763785.1 regulator -
  HZT25_RS06645 (HZT25_06620) - 1364474..1365124 (-) 651 WP_001095982.1 LexA family transcriptional regulator -
  HZT25_RS06650 (HZT25_06625) - 1365205..1365390 (+) 186 WP_000276885.1 Cro/CI family transcriptional regulator -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19154.34 Da        Isoelectric Point: 7.4686

>NTDB_id=465835 HZT25_RS06595 WP_000168264.1 1360196..1360711(-) (ssb) [Shigella flexneri strain STLEFF_33]
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQPQQQGNHSEPPMDFDDDIPFAPVT
LPFPRHAIHAI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=465835 HZT25_RS06595 WP_000168264.1 1360196..1360711(-) (ssb) [Shigella flexneri strain STLEFF_33]
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAGTATCTGCGGAAAGGCTCAGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGTGGACAGGATCGGTTCACTACCGAAGTTATCGTAGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAACGGTCAGCAACAAA
GACAGCAACCTCAGCAGCAGGGGAATCACAGCGAACCACCTATGGATTTTGACGACGATATACCCTTTGCACCAGTAACT
CTCCCCTTCCCTCGTCACGCTATTCACGCAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

62.712

100

0.649
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.556
  ssb Neisseria gonorrhoeae MS11

42.045

100

0.433
  ssb Neisseria meningitidis MC58

41.477

100

0.427