Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZT32_RS22170 Genome accession   NZ_CP058874
Coordinates   4560303..4560839 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain STLEFF_47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4555303..4565839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT32_RS22150 (HZT32_21960) soxR 4557032..4557496 (-) 465 WP_039004760.1 redox-sensitive transcriptional activator SoxR -
  HZT32_RS22155 (HZT32_21965) soxS 4557582..4557905 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HZT32_RS22160 (HZT32_21970) pdeC 4557908..4559494 (-) 1587 WP_000017978.1 c-di-GMP phosphodiesterase PdeC -
  HZT32_RS22165 (HZT32_21975) yjcB 4559923..4560204 (+) 282 WP_001295689.1 YjcB family protein -
  HZT32_RS22170 (HZT32_21980) ssb 4560303..4560839 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HZT32_RS22175 (HZT32_21985) uvrA 4561094..4563916 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HZT32_RS22180 (HZT32_21990) yjbR 4563951..4564307 (-) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  HZT32_RS22185 (HZT32_21995) yjbQ 4564311..4564727 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HZT32_RS22190 (HZT32_22000) aphA 4564838..4565551 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=465796 HZT32_RS22170 WP_000168305.1 4560303..4560839(-) (ssb) [Escherichia coli strain STLEFF_47]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=465796 HZT32_RS22170 WP_000168305.1 4560303..4560839(-) (ssb) [Escherichia coli strain STLEFF_47]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489