Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZT23_RS23770 Genome accession   NZ_CP058859
Coordinates   4896039..4896563 (-) Length   174 a.a.
NCBI ID   WP_080838412.1    Uniprot ID   A0A8I0DDE2
Organism   Klebsiella quasipneumoniae strain STLEFF_28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4891039..4901563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT23_RS23760 (HZT23_23660) - 4891495..4893753 (-) 2259 WP_155009513.1 TonB-dependent siderophore receptor -
  HZT23_RS23765 (HZT23_23665) - 4894343..4895917 (+) 1575 WP_240708935.1 lytic transglycosylase F -
  HZT23_RS23770 (HZT23_23670) ssb 4896039..4896563 (-) 525 WP_080838412.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HZT23_RS23775 (HZT23_23675) uvrA 4896815..4899640 (+) 2826 WP_240708937.1 excinuclease ABC subunit UvrA -
  HZT23_RS23780 (HZT23_23680) - 4899641..4899997 (-) 357 WP_004206305.1 MmcQ/YjbR family DNA-binding protein -
  HZT23_RS23785 (HZT23_23685) - 4900001..4900417 (-) 417 WP_004206303.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HZT23_RS23790 (HZT23_23690) aphA 4900549..4901262 (-) 714 WP_004206302.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18739.75 Da        Isoelectric Point: 5.2358

>NTDB_id=465727 HZT23_RS23770 WP_080838412.1 4896039..4896563(-) (ssb) [Klebsiella quasipneumoniae strain STLEFF_28]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGVPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=465727 HZT23_RS23770 WP_080838412.1 4896039..4896563(-) (ssb) [Klebsiella quasipneumoniae strain STLEFF_28]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCAGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCTGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAACTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACTGAAGTGGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGTACCGGCAGGCGGCGGACAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCTCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.045

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.494