Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZT26_RS16530 Genome accession   NZ_CP058839
Coordinates   3399903..3400439 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella flexneri strain STLEFF_34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3394903..3405439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT26_RS16510 (HZT26_16405) aphA 3395192..3395905 (+) 714 WP_001226928.1 acid phosphatase AphA -
  HZT26_RS16515 (HZT26_16410) - 3396016..3396432 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HZT26_RS16520 (HZT26_16415) - 3396436..3396792 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HZT26_RS16525 (HZT26_16420) uvrA 3396827..3399649 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HZT26_RS16530 (HZT26_16425) ssb 3399903..3400439 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HZT26_RS16535 (HZT26_16430) - 3400598..3401845 (+) 1248 WP_000414651.1 site-specific integrase -
  HZT26_RS16540 (HZT26_16435) - 3401832..3403370 (+) 1539 WP_001333349.1 site-specific integrase -
  HZT26_RS16545 (HZT26_16440) - 3403387..3405420 (+) 2034 WP_000807722.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=465614 HZT26_RS16530 WP_000168305.1 3399903..3400439(+) (ssb) [Shigella flexneri strain STLEFF_34]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=465614 HZT26_RS16530 WP_000168305.1 3399903..3400439(+) (ssb) [Shigella flexneri strain STLEFF_34]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489