Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZT08_RS21465 Genome accession   NZ_CP058790
Coordinates   4417013..4417549 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella flexneri strain STLIN_6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4412013..4422549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT08_RS21445 (HZT08_21245) soxR 4413741..4414205 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HZT08_RS21450 (HZT08_21250) soxS 4414291..4414614 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HZT08_RS21455 (HZT08_21255) pdeC 4414617..4416203 (-) 1587 WP_021554619.1 c-di-GMP phosphodiesterase PdeC -
  HZT08_RS21460 (HZT08_21260) - 4416633..4416914 (+) 282 Protein_4217 YjcB family protein -
  HZT08_RS21465 (HZT08_21265) ssb 4417013..4417549 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HZT08_RS21470 (HZT08_21270) uvrA 4417803..4420625 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HZT08_RS21475 (HZT08_21275) - 4420660..4421016 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HZT08_RS21480 (HZT08_21280) - 4421020..4421436 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HZT08_RS21485 (HZT08_21285) aphA 4421547..4422260 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=465455 HZT08_RS21465 WP_000168305.1 4417013..4417549(-) (ssb) [Shigella flexneri strain STLIN_6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=465455 HZT08_RS21465 WP_000168305.1 4417013..4417549(-) (ssb) [Shigella flexneri strain STLIN_6]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489