Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HZS99_RS07130 | Genome accession | NZ_CP058748 |
| Coordinates | 1489292..1489798 (-) | Length | 168 a.a. |
| NCBI ID | WP_071447819.1 | Uniprot ID | - |
| Organism | Escherichia coli strain STLIN_13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1471067..1523261 | 1489292..1489798 | within | 0 |
Gene organization within MGE regions
Location: 1471067..1523261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZS99_RS07040 (HZS99_06975) | dsdC | 1471067..1472014 (+) | 948 | WP_001361861.1 | DNA-binding transcriptional regulator DsdC | - |
| HZS99_RS07045 (HZS99_06980) | ipuB | 1472409..1472978 (-) | 570 | WP_001224627.1 | tyrosine-type DNA invertase IpuB | - |
| HZS99_RS07050 (HZS99_06985) | ipuA | 1473727..1474356 (+) | 630 | WP_001181154.1 | tyrosine-type DNA invertase IpuA | - |
| HZS99_RS07055 (HZS99_06990) | - | 1474674..1475294 (+) | 621 | WP_000243052.1 | LuxR C-terminal-related transcriptional regulator | - |
| HZS99_RS07060 (HZS99_06995) | - | 1475319..1483238 (+) | 7920 | WP_001361862.1 | phase-variable autotransporter adhesin UpaE | - |
| HZS99_RS07065 (HZS99_07000) | - | 1483286..1483816 (+) | 531 | WP_000100042.1 | hypothetical protein | - |
| HZS99_RS07070 (HZS99_07005) | torI | 1484342..1484542 (-) | 201 | WP_001163428.1 | response regulator inhibitor TorI | - |
| HZS99_RS07075 (HZS99_07010) | - | 1484600..1484767 (-) | 168 | WP_108997186.1 | hypothetical protein | - |
| HZS99_RS07080 (HZS99_07015) | - | 1484825..1485625 (-) | 801 | WP_108997184.1 | hypothetical protein | - |
| HZS99_RS07085 (HZS99_07020) | - | 1485668..1485952 (-) | 285 | WP_124053540.1 | ASCH domain-containing protein | - |
| HZS99_RS07090 (HZS99_07025) | - | 1485945..1486715 (-) | 771 | WP_233324800.1 | hypothetical protein | - |
| HZS99_RS07095 | - | 1486716..1486841 (-) | 126 | Protein_1389 | hypothetical protein | - |
| HZS99_RS07100 (HZS99_07030) | - | 1486844..1487035 (-) | 192 | WP_108997177.1 | hypothetical protein | - |
| HZS99_RS07105 (HZS99_07035) | - | 1487037..1487528 (-) | 492 | WP_108997175.1 | XF1762 family protein | - |
| HZS99_RS07110 | - | 1487774..1488226 (-) | 453 | Protein_1392 | ead/Ea22-like family protein | - |
| HZS99_RS07115 (HZS99_07045) | - | 1488223..1488810 (-) | 588 | WP_222563252.1 | hypothetical protein | - |
| HZS99_RS07120 (HZS99_07050) | - | 1488807..1488971 (-) | 165 | WP_001214456.1 | DUF2737 family protein | - |
| HZS99_RS07125 (HZS99_07055) | - | 1488982..1489278 (-) | 297 | WP_078207967.1 | phage anti-RecBCD protein | - |
| HZS99_RS07130 (HZS99_07060) | ssb | 1489292..1489798 (-) | 507 | WP_071447819.1 | single-stranded DNA-binding protein | Machinery gene |
| HZS99_RS07135 (HZS99_07065) | - | 1489799..1490506 (-) | 708 | WP_058115767.1 | Rad52/Rad22 family DNA repair protein | - |
| HZS99_RS07140 (HZS99_07070) | kil | 1490761..1490913 (-) | 153 | WP_001243355.1 | host cell division inhibitory peptide Kil | - |
| HZS99_RS07145 (HZS99_07075) | - | 1490898..1491029 (-) | 132 | WP_000638547.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| HZS99_RS07150 (HZS99_07080) | - | 1491054..1492022 (-) | 969 | WP_138217215.1 | cell envelope biogenesis protein TolA | - |
| HZS99_RS07155 (HZS99_07085) | - | 1492204..1492425 (-) | 222 | WP_233324796.1 | hypothetical protein | - |
| HZS99_RS07160 (HZS99_07090) | - | 1492545..1492850 (-) | 306 | WP_113403480.1 | regulator | - |
| HZS99_RS07165 (HZS99_07095) | - | 1493165..1493815 (-) | 651 | WP_001095982.1 | LexA family transcriptional regulator | - |
| HZS99_RS07170 (HZS99_07100) | - | 1493896..1494081 (+) | 186 | WP_000276885.1 | Cro/CI family transcriptional regulator | - |
| HZS99_RS07175 (HZS99_07105) | - | 1494197..1494493 (+) | 297 | WP_172479720.1 | CII family transcriptional regulator | - |
| HZS99_RS07180 (HZS99_07110) | - | 1494526..1494672 (+) | 147 | WP_016238079.1 | DUF2740 family protein | - |
| HZS99_RS07185 (HZS99_07115) | - | 1494665..1495564 (+) | 900 | WP_172479722.1 | DNA replication protein | - |
| HZS99_RS07190 (HZS99_07120) | - | 1495554..1496990 (+) | 1437 | WP_172479723.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| HZS99_RS07195 (HZS99_07125) | - | 1497067..1497507 (+) | 441 | WP_222563253.1 | recombination protein NinB | - |
| HZS99_RS07200 (HZS99_07130) | - | 1497504..1498094 (+) | 591 | WP_021560741.1 | MT-A70 family methyltransferase | - |
| HZS99_RS07205 (HZS99_07135) | ninD | 1498091..1498264 (+) | 174 | WP_000679700.1 | protein NinD | - |
| HZS99_RS07210 (HZS99_07140) | - | 1498231..1498407 (+) | 177 | WP_000113772.1 | NinE family protein | - |
| HZS99_RS07215 (HZS99_07145) | - | 1498410..1498769 (+) | 360 | WP_109555390.1 | phage protein NinX family protein | - |
| HZS99_RS07220 (HZS99_07150) | - | 1498769..1498945 (+) | 177 | WP_000950973.1 | protein NinF | - |
| HZS99_RS07225 (HZS99_07155) | - | 1498938..1499150 (+) | 213 | WP_001286917.1 | hypothetical protein | - |
| HZS99_RS07230 (HZS99_07160) | - | 1499143..1499433 (+) | 291 | WP_222563254.1 | DUF1364 domain-containing protein | - |
| HZS99_RS07235 (HZS99_07165) | - | 1499430..1499792 (+) | 363 | WP_001008180.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HZS99_RS07240 (HZS99_07170) | - | 1499789..1499977 (+) | 189 | WP_000994515.1 | protein ninH | - |
| HZS99_RS07245 (HZS99_07175) | - | 1499974..1500597 (+) | 624 | WP_001235461.1 | antitermination protein | - |
| HZS99_RS07250 (HZS99_07180) | - | 1501701..1502024 (+) | 324 | WP_000783734.1 | phage holin, lambda family | - |
| HZS99_RS07255 (HZS99_07185) | - | 1502008..1502484 (+) | 477 | WP_089564108.1 | glycoside hydrolase family protein | - |
| HZS99_RS07260 (HZS99_07190) | - | 1502481..1502948 (+) | 468 | WP_138217227.1 | lysis protein | - |
| HZS99_RS07265 (HZS99_07195) | - | 1502936..1503088 (+) | 153 | WP_001139681.1 | hypothetical protein | - |
| HZS99_RS07270 (HZS99_07200) | - | 1503253..1503495 (+) | 243 | WP_000807788.1 | DUF2560 family protein | - |
| HZS99_RS07275 (HZS99_07205) | - | 1503531..1504019 (+) | 489 | WP_000729920.1 | DNA-packaging protein | - |
| HZS99_RS07280 (HZS99_07210) | - | 1503997..1505496 (+) | 1500 | WP_000417851.1 | terminase family protein | - |
| HZS99_RS07285 (HZS99_07215) | - | 1505497..1507662 (+) | 2166 | WP_023486193.1 | portal protein | - |
| HZS99_RS07290 (HZS99_07220) | - | 1507676..1508587 (+) | 912 | WP_000373010.1 | scaffold protein | - |
| HZS99_RS07295 (HZS99_07225) | - | 1508587..1509882 (+) | 1296 | WP_222563255.1 | P22 phage major capsid protein family protein | - |
| HZS99_RS07300 (HZS99_07230) | - | 1509927..1510181 (+) | 255 | WP_106382293.1 | hypothetical protein | - |
| HZS99_RS07305 (HZS99_07235) | - | 1510159..1510659 (+) | 501 | WP_032153671.1 | packaged DNA stabilization gp4 family protein | - |
| HZS99_RS07310 (HZS99_07240) | - | 1510659..1512077 (+) | 1419 | WP_222563256.1 | packaged DNA stabilization protein gp10 | - |
| HZS99_RS07315 (HZS99_07245) | - | 1512077..1513030 (+) | 954 | WP_087503464.1 | tail needle knob protein | - |
| HZS99_RS07320 (HZS99_07250) | - | 1513030..1513485 (+) | 456 | WP_087503465.1 | DUF2824 family protein | - |
| HZS99_RS07325 (HZS99_07255) | - | 1513488..1514180 (+) | 693 | WP_087503466.1 | DNA transfer protein | - |
| HZS99_RS07330 (HZS99_07260) | - | 1514190..1515521 (+) | 1332 | WP_087503467.1 | phage DNA ejection protein | - |
| HZS99_RS07335 (HZS99_07265) | - | 1515522..1517915 (+) | 2394 | WP_087503468.1 | lytic transglycosylase domain-containing protein | - |
| HZS99_RS07340 (HZS99_07270) | - | 1518080..1520479 (+) | 2400 | WP_029701265.1 | phage head-binding domain-containing protein | - |
| HZS99_RS07345 (HZS99_07275) | - | 1520599..1521135 (-) | 537 | WP_060579112.1 | GDSL-type esterase/lipase family protein | - |
| HZS99_RS07350 (HZS99_07280) | - | 1521331..1521987 (+) | 657 | WP_016242483.1 | DUF1796 family putative cysteine peptidase | - |
| HZS99_RS07355 (HZS99_07285) | intS | 1522104..1523261 (-) | 1158 | WP_222563258.1 | prophage integrase IntS | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18761.06 Da Isoelectric Point: 8.4877
>NTDB_id=465310 HZS99_RS07130 WP_071447819.1 1489292..1489798(-) (ssb) [Escherichia coli strain STLIN_13]
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGSIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGSIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
Nucleotide
Download Length: 507 bp
>NTDB_id=465310 HZS99_RS07130 WP_071447819.1 1489292..1489798(-) (ssb) [Escherichia coli strain STLIN_13]
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCAGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCAGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
61.798 |
100 |
0.655 |
| ssb | Glaesserella parasuis strain SC1401 |
45.856 |
100 |
0.494 |
| ssb | Neisseria meningitidis MC58 |
38.068 |
100 |
0.399 |
| ssb | Neisseria gonorrhoeae MS11 |
38.068 |
100 |
0.399 |