Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SSU16085_RS08985 Genome accession   NZ_CP058740
Coordinates   1853769..1854434 (-) Length   221 a.a.
NCBI ID   WP_043032914.1    Uniprot ID   A0A116QBH8
Organism   Streptococcus suis strain 16085/3b     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1848769..1859434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS08980 (SSU16085_01828) hpf 1853150..1853692 (-) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SSU16085_RS08985 (SSU16085_01829) comFC/cflB 1853769..1854434 (-) 666 WP_043032914.1 ComF family protein Machinery gene
  SSU16085_RS08990 (SSU16085_01830) comFA/cflA 1854427..1855719 (-) 1293 WP_024394375.1 DEAD/DEAH box helicase Machinery gene
  SSU16085_RS08995 (SSU16085_01831) - 1855776..1856408 (+) 633 WP_024394374.1 YigZ family protein -
  SSU16085_RS09000 (SSU16085_01832) cysK 1856498..1857424 (+) 927 WP_029178437.1 cysteine synthase A -
  SSU16085_RS09005 (SSU16085_01833) - 1857450..1857821 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  SSU16085_RS09010 (SSU16085_01834) - 1857823..1859223 (-) 1401 WP_024394814.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25835.63 Da        Isoelectric Point: 8.2726

>NTDB_id=465163 SSU16085_RS08985 WP_043032914.1 1853769..1854434(-) (comFC/cflB) [Streptococcus suis strain 16085/3b]
MSNCLLCDQTMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=465163 SSU16085_RS08985 WP_043032914.1 1853769..1854434(-) (comFC/cflB) [Streptococcus suis strain 16085/3b]
ATGTCTAATTGTCTATTGTGTGATCAAACTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGGG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116QBH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484