Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SSU16085_RS07970 Genome accession   NZ_CP058740
Coordinates   1649138..1649782 (+) Length   214 a.a.
NCBI ID   WP_024417715.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1644138..1654782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS07950 (SSU16085_01619) pflA 1645285..1646076 (-) 792 WP_012027587.1 pyruvate formate-lyase-activating protein -
  SSU16085_RS07955 (SSU16085_01620) - 1646197..1647534 (-) 1338 WP_004194632.1 hemolysin family protein -
  SSU16085_RS07960 (SSU16085_01621) - 1647667..1648446 (+) 780 WP_024417713.1 ABC transporter ATP-binding protein -
  SSU16085_RS07965 (SSU16085_01622) - 1648462..1649016 (-) 555 WP_024417714.1 class I SAM-dependent methyltransferase -
  SSU16085_RS07970 (SSU16085_01623) cclA/cilC 1649138..1649782 (+) 645 WP_024417715.1 A24 family peptidase Machinery gene
  SSU16085_RS07975 (SSU16085_01624) - 1649890..1651350 (+) 1461 WP_043033032.1 nicotinate phosphoribosyltransferase -
  SSU16085_RS07980 (SSU16085_01625) nadE 1651363..1652187 (+) 825 WP_024413453.1 ammonia-dependent NAD(+) synthetase -
  SSU16085_RS07985 (SSU16085_01626) - 1653280..1653807 (-) 528 WP_002942846.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24209.37 Da        Isoelectric Point: 8.4760

>NTDB_id=465159 SSU16085_RS07970 WP_024417715.1 1649138..1649782(+) (cclA/cilC) [Streptococcus suis strain 16085/3b]
MKTIILFFLGASIGSFLGLVIDRFPEQPIIAPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=465159 SSU16085_RS07970 WP_024417715.1 1649138..1649782(+) (cclA/cilC) [Streptococcus suis strain 16085/3b]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GCCCATTATCGCCCCTTCTAGTCACTGTAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGATTGGAATTCTTAGCCGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGCTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTATTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.057

99.065

0.486
  cclA/cilC Streptococcus pneumoniae Rx1

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

46.698

99.065

0.463
  cclA/cilC Streptococcus mitis NCTC 12261

45.283

99.065

0.449