Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZS87_RS13435 Genome accession   NZ_CP058725
Coordinates   2732886..2733422 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain S171-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2727886..2738422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS87_RS13415 soxR 2729614..2730078 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HZS87_RS13420 soxS 2730164..2730487 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HZS87_RS13425 pdeC 2730490..2732076 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  HZS87_RS13430 yjcB 2732506..2732787 (+) 282 WP_001295689.1 YjcB family protein -
  HZS87_RS13435 ssb 2732886..2733422 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HZS87_RS13440 uvrA 2733676..2736498 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HZS87_RS13445 yjbR 2736533..2736889 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HZS87_RS13450 yjbQ 2736893..2737309 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HZS87_RS13455 aphA 2737420..2738133 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=465036 HZS87_RS13435 WP_000168305.1 2732886..2733422(-) (ssb) [Escherichia coli strain S171-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=465036 HZS87_RS13435 WP_000168305.1 2732886..2733422(-) (ssb) [Escherichia coli strain S171-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489