Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZS86_RS07140 Genome accession   NZ_CP058719
Coordinates   1479445..1479981 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain M159-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1474445..1484981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS86_RS07120 aphA 1474734..1475447 (+) 714 WP_001395166.1 acid phosphatase AphA -
  HZS86_RS07125 yjbQ 1475558..1475974 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HZS86_RS07130 yjbR 1475978..1476334 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HZS86_RS07135 uvrA 1476369..1479191 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HZS86_RS07140 ssb 1479445..1479981 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HZS86_RS07145 yjcB 1480080..1480361 (-) 282 WP_001295689.1 YjcB family protein -
  HZS86_RS07150 pdeC 1480791..1482377 (+) 1587 Protein_1391 c-di-GMP phosphodiesterase PdeC -
  HZS86_RS07155 soxS 1482380..1482703 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HZS86_RS07160 soxR 1482789..1483253 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=465020 HZS86_RS07140 WP_000168305.1 1479445..1479981(+) (ssb) [Escherichia coli strain M159-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=465020 HZS86_RS07140 WP_000168305.1 1479445..1479981(+) (ssb) [Escherichia coli strain M159-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489