Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HYI45_RS07360 Genome accession   NZ_CP058714
Coordinates   1522108..1522644 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain M172-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1517108..1527644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYI45_RS07340 soxR 1518836..1519300 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  HYI45_RS07345 soxS 1519386..1519709 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HYI45_RS07350 pdeC 1519712..1521298 (-) 1587 WP_000019514.1 c-di-GMP phosphodiesterase PdeC -
  HYI45_RS07355 yjcB 1521728..1522009 (+) 282 WP_001295689.1 YjcB family protein -
  HYI45_RS07360 ssb 1522108..1522644 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HYI45_RS07365 uvrA 1522899..1525721 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HYI45_RS07370 yjbR 1525756..1526112 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HYI45_RS07375 yjbQ 1526116..1526532 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HYI45_RS07380 aphA 1526643..1527356 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=464989 HYI45_RS07360 WP_000168305.1 1522108..1522644(-) (ssb) [Escherichia coli strain M172-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=464989 HYI45_RS07360 WP_000168305.1 1522108..1522644(-) (ssb) [Escherichia coli strain M172-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489