Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HZS88_RS23055 | Genome accession | NZ_CP058709 |
| Coordinates | 4643076..4643582 (-) | Length | 168 a.a. |
| NCBI ID | WP_239804032.1 | Uniprot ID | - |
| Organism | Escherichia coli strain S163-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4638878..4657120 | 4643076..4643582 | within | 0 |
Gene organization within MGE regions
Location: 4638878..4657120
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZS88_RS22995 | - | 4638878..4639069 (-) | 192 | WP_000132739.1 | AlpA family phage regulatory protein | - |
| HZS88_RS23000 | - | 4639149..4639493 (-) | 345 | WP_001281192.1 | hypothetical protein | - |
| HZS88_RS23005 | - | 4639520..4639687 (-) | 168 | WP_000545737.1 | hypothetical protein | - |
| HZS88_RS23010 | - | 4639846..4640123 (-) | 278 | Protein_4507 | DUF4752 family protein | - |
| HZS88_RS25445 | - | 4640123..4640737 (-) | 615 | WP_345773985.1 | DUF551 domain-containing protein | - |
| HZS88_RS23020 | - | 4640765..4640896 (-) | 132 | Protein_4509 | DUF551 domain-containing protein | - |
| HZS88_RS23025 | - | 4640900..4641331 (-) | 432 | WP_239804029.1 | hypothetical protein | - |
| HZS88_RS23030 | - | 4641331..4641873 (-) | 543 | WP_239804030.1 | ead/Ea22-like family protein | - |
| HZS88_RS23035 | - | 4641870..4642142 (-) | 273 | WP_001549480.1 | hypothetical protein | - |
| HZS88_RS23040 | - | 4642139..4642597 (-) | 459 | WP_239804031.1 | hypothetical protein | - |
| HZS88_RS23045 | - | 4642594..4642758 (-) | 165 | WP_001214446.1 | DUF2737 family protein | - |
| HZS88_RS23050 | - | 4642769..4643062 (-) | 294 | WP_001111278.1 | phage anti-RecBCD protein | - |
| HZS88_RS23055 | ssb | 4643076..4643582 (-) | 507 | WP_239804032.1 | single-stranded DNA-binding protein | Machinery gene |
| HZS88_RS23060 | - | 4643579..4644046 (-) | 468 | WP_000018646.1 | HNH endonuclease | - |
| HZS88_RS23065 | - | 4644047..4644754 (-) | 708 | WP_239804033.1 | Rad52/Rad22 family DNA repair protein | - |
| HZS88_RS23070 | - | 4644763..4644933 (-) | 171 | WP_000050554.1 | hypothetical protein | - |
| HZS88_RS23075 | kil | 4645009..4645161 (-) | 153 | WP_016248932.1 | host cell division inhibitory peptide Kil | - |
| HZS88_RS23080 | - | 4645146..4645277 (-) | 132 | WP_000638547.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| HZS88_RS23085 | - | 4645302..4646270 (-) | 969 | WP_118014687.1 | cell envelope biogenesis protein TolA | - |
| HZS88_RS23090 | - | 4646560..4646829 (-) | 270 | WP_046082873.1 | hypothetical protein | - |
| HZS88_RS23095 | - | 4646867..4647490 (-) | 624 | WP_239804071.1 | Nmad5 family putative nucleotide modification protein | - |
| HZS88_RS23100 | - | 4647556..4647780 (-) | 225 | WP_001077327.1 | hypothetical protein | - |
| HZS88_RS23105 | - | 4647784..4648056 (-) | 273 | WP_042353380.1 | hypothetical protein | - |
| HZS88_RS23110 | - | 4648371..4649021 (-) | 651 | WP_001095982.1 | LexA family transcriptional regulator | - |
| HZS88_RS23115 | - | 4649102..4649287 (+) | 186 | WP_000276885.1 | Cro/CI family transcriptional regulator | - |
| HZS88_RS23120 | - | 4649403..4649699 (+) | 297 | WP_000035948.1 | CII family transcriptional regulator | - |
| HZS88_RS23125 | - | 4649732..4649893 (+) | 162 | WP_000166961.1 | hypothetical protein | - |
| HZS88_RS23130 | - | 4649880..4650701 (+) | 822 | WP_001608293.1 | replication protein | - |
| HZS88_RS23135 | - | 4650698..4652074 (+) | 1377 | WP_118014690.1 | replicative DNA helicase | - |
| HZS88_RS23140 | - | 4652470..4652670 (+) | 201 | WP_000049638.1 | hypothetical protein | - |
| HZS88_RS23145 | - | 4652682..4652954 (+) | 273 | WP_053265699.1 | hypothetical protein | - |
| HZS88_RS23150 | - | 4652957..4653403 (+) | 447 | WP_116319233.1 | recombination protein NinB | - |
| HZS88_RS23155 | - | 4653400..4653927 (+) | 528 | WP_000153280.1 | phage N-6-adenine-methyltransferase | - |
| HZS88_RS23160 | - | 4653924..4654106 (+) | 183 | WP_001254257.1 | NinE family protein | - |
| HZS88_RS23165 | - | 4654103..4654273 (+) | 171 | WP_000566866.1 | protein NinF | - |
| HZS88_RS23170 | - | 4654266..4654988 (+) | 723 | WP_062887017.1 | DNA-binding protein | - |
| HZS88_RS23175 | - | 4654988..4655278 (+) | 291 | WP_118014693.1 | DUF1364 domain-containing protein | - |
| HZS88_RS23180 | - | 4655275..4655637 (+) | 363 | WP_001008199.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HZS88_RS23185 | - | 4655634..4655822 (+) | 189 | WP_024259161.1 | protein ninH | - |
| HZS88_RS23190 | - | 4655819..4656307 (+) | 489 | WP_001385993.1 | antiterminator Q family protein | - |
| HZS88_RS23205 | - | 4656797..4657120 (+) | 324 | WP_000783734.1 | phage holin, lambda family | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18751.02 Da Isoelectric Point: 8.4877
>NTDB_id=464984 HZS88_RS23055 WP_239804032.1 4643076..4643582(-) (ssb) [Escherichia coli strain S163-2]
MSSRGINKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
SRHAIHAI
MSSRGINKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
SRHAIHAI
Nucleotide
Download Length: 507 bp
>NTDB_id=464984 HZS88_RS23055 WP_239804032.1 4643076..4643582(-) (ssb) [Escherichia coli strain S163-2]
ATGAGTTCTCGCGGGATAAATAAGGTGATTATCCTTGGTCGGGTAGGGCAAGACCCGGAAGTTCGATACTCACCATCAGG
TACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
TCTCGTCACGCTATTCACGCAATTTAA
ATGAGTTCTCGCGGGATAAATAAGGTGATTATCCTTGGTCGGGTAGGGCAAGACCCGGAAGTTCGATACTCACCATCAGG
TACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
TCTCGTCACGCTATTCACGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
61.017 |
100 |
0.643 |
| ssb | Glaesserella parasuis strain SC1401 |
45.304 |
100 |
0.488 |
| ssb | Neisseria meningitidis MC58 |
38.636 |
100 |
0.405 |
| ssb | Neisseria gonorrhoeae MS11 |
38.636 |
100 |
0.405 |