Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZS88_RS12615 Genome accession   NZ_CP058709
Coordinates   2497063..2497599 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain S163-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2492063..2502599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS88_RS12580 soxR 2493014..2493478 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HZS88_RS12585 soxS 2493564..2493887 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HZS88_RS12590 - 2493890..2494222 (-) 333 WP_000952090.1 EAL domain-containing protein -
  HZS88_RS12595 - 2494235..2495227 (-) 993 WP_239804073.1 EAL domain-containing protein -
  HZS88_RS12605 - 2495981..2496253 (-) 273 Protein_2477 CSS-motif domain-containing protein -
  HZS88_RS12610 yjcB 2496683..2496964 (+) 282 WP_001295689.1 YjcB family protein -
  HZS88_RS12615 ssb 2497063..2497599 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HZS88_RS12620 uvrA 2497853..2500675 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HZS88_RS12625 yjbR 2500710..2501066 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HZS88_RS12630 yjbQ 2501070..2501486 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HZS88_RS12635 aphA 2501597..2502310 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=464966 HZS88_RS12615 WP_000168305.1 2497063..2497599(-) (ssb) [Escherichia coli strain S163-2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=464966 HZS88_RS12615 WP_000168305.1 2497063..2497599(-) (ssb) [Escherichia coli strain S163-2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489