Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HYQ43_RS14225 Genome accession   NZ_CP058690
Coordinates   1257167..1257673 (+) Length   168 a.a.
NCBI ID   WP_024845110.1    Uniprot ID   A0A1I5JTS5
Organism   Paracoccus pantotrophus strain ACCC10489     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1252167..1262673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYQ43_RS14205 (HYQ43_14205) - 1253912..1254478 (-) 567 WP_024845114.1 hypothetical protein -
  HYQ43_RS14210 (HYQ43_14210) hemB 1254630..1255628 (+) 999 WP_024845113.1 porphobilinogen synthase -
  HYQ43_RS14215 (HYQ43_14215) - 1255699..1256271 (+) 573 WP_028710600.1 YSC84-related protein -
  HYQ43_RS14220 (HYQ43_14220) - 1256313..1256960 (-) 648 WP_024845111.1 lytic transglycosylase domain-containing protein -
  HYQ43_RS14225 (HYQ43_14225) ssb 1257167..1257673 (+) 507 WP_024845110.1 single-stranded DNA-binding protein Machinery gene
  HYQ43_RS14230 (HYQ43_14230) - 1257733..1258503 (-) 771 WP_024845109.1 FadR/GntR family transcriptional regulator -
  HYQ43_RS14235 (HYQ43_14235) - 1258512..1259996 (-) 1485 WP_024845108.1 M81 family metallopeptidase -
  HYQ43_RS14240 (HYQ43_14240) - 1259993..1261252 (-) 1260 WP_024845107.1 Zn-dependent hydrolase -
  HYQ43_RS14245 (HYQ43_14245) - 1261264..1261968 (-) 705 WP_024845106.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17880.43 Da        Isoelectric Point: 6.4863

>NTDB_id=464952 HYQ43_RS14225 WP_024845110.1 1257167..1257673(+) (ssb) [Paracoccus pantotrophus strain ACCC10489]
MAGSVNKVILVGNLGQDPEIRSFPSGGKVANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQSGNDRYSTEVALRPFRSELHMLDSRGGGGGGGRDDGYGGGGYGGGGYGGGSSSGGSSSGGGGQSQNRP
DFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=464952 HYQ43_RS14225 WP_024845110.1 1257167..1257673(+) (ssb) [Paracoccus pantotrophus strain ACCC10489]
ATGGCTGGCAGCGTGAACAAGGTGATCCTGGTCGGCAACCTGGGCCAAGACCCGGAGATCCGCAGCTTTCCCAGCGGCGG
CAAGGTCGCCAACCTGCGCATCGCCACGTCCGAGACCTGGAAGGACCGCAATACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCACACGGTCGCCATCTATTCCGAGCCCCTGGTCCGCGTGGCCGAGCAATATCTGAAAAAGGGCTCCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAGTGGCAGGACCAGAGCGGCAACGACCGCTATTCGACCGAGGTGGCGCTGCGCCCCTT
CCGCAGCGAGCTGCACATGCTCGACAGCCGCGGCGGCGGCGGTGGCGGCGGCCGCGATGACGGTTATGGCGGCGGCGGTT
ACGGTGGCGGCGGCTATGGCGGCGGCAGCTCGTCGGGCGGCAGTTCCTCGGGCGGCGGCGGGCAATCGCAGAACCGGCCC
GATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I5JTS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.757

100

0.554
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.53
  ssb Neisseria meningitidis MC58

39.894

100

0.446
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.429