Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HYQ43_RS04525 | Genome accession | NZ_CP058689 |
| Coordinates | 921234..921674 (-) | Length | 146 a.a. |
| NCBI ID | WP_179921091.1 | Uniprot ID | A0A7H9BQD3 |
| Organism | Paracoccus pantotrophus strain ACCC10489 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 916030..948565 | 921234..921674 | within | 0 |
Gene organization within MGE regions
Location: 916030..948565
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HYQ43_RS04465 (HYQ43_04465) | - | 916030..917025 (-) | 996 | WP_257154196.1 | tyrosine-type recombinase/integrase | - |
| HYQ43_RS04470 (HYQ43_04470) | - | 917034..917198 (-) | 165 | WP_155987319.1 | hypothetical protein | - |
| HYQ43_RS04475 (HYQ43_04475) | - | 917199..917843 (-) | 645 | WP_179921075.1 | hypothetical protein | - |
| HYQ43_RS04480 (HYQ43_04480) | - | 917836..917994 (-) | 159 | WP_179921077.1 | hypothetical protein | - |
| HYQ43_RS04485 (HYQ43_04485) | - | 917994..918458 (-) | 465 | WP_179921079.1 | hypothetical protein | - |
| HYQ43_RS04490 (HYQ43_04490) | - | 918458..919105 (-) | 648 | WP_179921081.1 | hypothetical protein | - |
| HYQ43_RS04495 (HYQ43_04495) | - | 919095..919634 (-) | 540 | WP_179921083.1 | hypothetical protein | - |
| HYQ43_RS04500 (HYQ43_04500) | - | 919631..920068 (-) | 438 | WP_257154197.1 | hypothetical protein | - |
| HYQ43_RS04505 (HYQ43_04505) | - | 920095..920448 (-) | 354 | WP_179921085.1 | HNH endonuclease | - |
| HYQ43_RS04510 (HYQ43_04510) | - | 920445..920630 (-) | 186 | WP_072461522.1 | hypothetical protein | - |
| HYQ43_RS04515 (HYQ43_04515) | - | 920627..921019 (-) | 393 | WP_179921087.1 | recombination protein NinB | - |
| HYQ43_RS04520 (HYQ43_04520) | - | 921019..921225 (-) | 207 | WP_179921089.1 | hypothetical protein | - |
| HYQ43_RS04525 (HYQ43_04525) | ssb | 921234..921674 (-) | 441 | WP_179921091.1 | single-stranded DNA-binding protein | Machinery gene |
| HYQ43_RS04530 (HYQ43_04530) | - | 921674..922282 (-) | 609 | WP_257154198.1 | hypothetical protein | - |
| HYQ43_RS04535 (HYQ43_04535) | - | 922381..923181 (-) | 801 | WP_179921095.1 | ERF family protein | - |
| HYQ43_RS04540 (HYQ43_04540) | - | 923191..923532 (-) | 342 | WP_179921097.1 | hypothetical protein | - |
| HYQ43_RS04545 (HYQ43_04545) | - | 923529..924068 (-) | 540 | WP_179921099.1 | hypothetical protein | - |
| HYQ43_RS04550 (HYQ43_04550) | - | 924193..924573 (-) | 381 | WP_179921101.1 | hypothetical protein | - |
| HYQ43_RS04555 (HYQ43_04555) | - | 924573..924767 (-) | 195 | WP_179921103.1 | hypothetical protein | - |
| HYQ43_RS04560 (HYQ43_04560) | - | 924767..925072 (-) | 306 | WP_179921105.1 | hypothetical protein | - |
| HYQ43_RS04565 (HYQ43_04565) | - | 925069..925251 (-) | 183 | WP_179921107.1 | hypothetical protein | - |
| HYQ43_RS04570 (HYQ43_04570) | - | 926020..926208 (+) | 189 | WP_179921110.1 | hypothetical protein | - |
| HYQ43_RS04575 (HYQ43_04575) | - | 926297..926782 (-) | 486 | WP_179921113.1 | DUF2335 domain-containing protein | - |
| HYQ43_RS04580 (HYQ43_04580) | - | 926730..926969 (-) | 240 | WP_179921115.1 | hypothetical protein | - |
| HYQ43_RS04585 (HYQ43_04585) | - | 927107..927331 (-) | 225 | WP_179921117.1 | hypothetical protein | - |
| HYQ43_RS23655 (HYQ43_04590) | - | 927491..927910 (-) | 420 | WP_420892177.1 | helix-turn-helix domain-containing protein | - |
| HYQ43_RS23660 (HYQ43_04595) | - | 927920..928141 (+) | 222 | WP_420892181.1 | helix-turn-helix transcriptional regulator | - |
| HYQ43_RS04600 (HYQ43_04600) | - | 928507..928701 (+) | 195 | WP_179921123.1 | hypothetical protein | - |
| HYQ43_RS04605 (HYQ43_04605) | - | 928698..928910 (+) | 213 | WP_257154200.1 | hypothetical protein | - |
| HYQ43_RS04610 (HYQ43_04610) | - | 928910..929440 (+) | 531 | WP_179921125.1 | class I SAM-dependent methyltransferase | - |
| HYQ43_RS04615 (HYQ43_04615) | - | 929505..929702 (+) | 198 | WP_179921127.1 | hypothetical protein | - |
| HYQ43_RS04620 (HYQ43_04620) | - | 929702..930067 (+) | 366 | WP_179921129.1 | endodeoxyribonuclease RusA | - |
| HYQ43_RS04625 (HYQ43_04625) | - | 930064..930822 (+) | 759 | WP_179921131.1 | helix-turn-helix domain-containing protein | - |
| HYQ43_RS04630 (HYQ43_04630) | - | 930800..931444 (+) | 645 | WP_155987338.1 | hypothetical protein | - |
| HYQ43_RS04635 (HYQ43_04635) | - | 931441..931728 (+) | 288 | WP_179921133.1 | helix-turn-helix domain-containing protein | - |
| HYQ43_RS04640 (HYQ43_04640) | - | 931725..932255 (+) | 531 | Protein_928 | hypothetical protein | - |
| HYQ43_RS04645 (HYQ43_04645) | - | 932433..933077 (+) | 645 | WP_179921135.1 | hypothetical protein | - |
| HYQ43_RS04650 (HYQ43_04650) | - | 933080..933766 (+) | 687 | WP_179921137.1 | hypothetical protein | - |
| HYQ43_RS04655 (HYQ43_04655) | - | 933763..935358 (+) | 1596 | WP_218927414.1 | hypothetical protein | - |
| HYQ43_RS04660 (HYQ43_04660) | - | 935355..935738 (+) | 384 | WP_028711067.1 | GNAT family N-acetyltransferase | - |
| HYQ43_RS04665 (HYQ43_04665) | - | 935927..937327 (+) | 1401 | WP_179921141.1 | hypothetical protein | - |
| HYQ43_RS04670 (HYQ43_04670) | - | 937324..938853 (+) | 1530 | WP_179921143.1 | hypothetical protein | - |
| HYQ43_RS04675 (HYQ43_04675) | - | 939010..939366 (-) | 357 | WP_036765984.1 | hypothetical protein | - |
| HYQ43_RS04680 (HYQ43_04680) | - | 939446..940480 (+) | 1035 | WP_179921145.1 | hypothetical protein | - |
| HYQ43_RS04685 (HYQ43_04685) | - | 940480..940671 (+) | 192 | WP_179921147.1 | hypothetical protein | - |
| HYQ43_RS04690 (HYQ43_04690) | - | 940668..940841 (+) | 174 | WP_179921149.1 | hypothetical protein | - |
| HYQ43_RS04695 (HYQ43_04695) | - | 940906..943107 (+) | 2202 | WP_179921151.1 | hypothetical protein | - |
| HYQ43_RS04700 (HYQ43_04700) | - | 943119..943388 (+) | 270 | WP_179921153.1 | hypothetical protein | - |
| HYQ43_RS04705 (HYQ43_04705) | - | 943391..943600 (+) | 210 | WP_179921155.1 | hypothetical protein | - |
| HYQ43_RS04710 (HYQ43_04710) | - | 943597..944250 (+) | 654 | WP_179921157.1 | hypothetical protein | - |
| HYQ43_RS04715 (HYQ43_04715) | - | 944247..944429 (+) | 183 | WP_179921159.1 | hypothetical protein | - |
| HYQ43_RS04720 (HYQ43_04720) | - | 944565..944768 (+) | 204 | WP_179921161.1 | hypothetical protein | - |
| HYQ43_RS04725 (HYQ43_04725) | - | 944759..945112 (-) | 354 | WP_179921163.1 | hypothetical protein | - |
| HYQ43_RS04730 (HYQ43_04730) | - | 945311..945499 (-) | 189 | WP_028711080.1 | hypothetical protein | - |
| HYQ43_RS04735 (HYQ43_04735) | - | 945527..945841 (-) | 315 | WP_179921165.1 | hypothetical protein | - |
| HYQ43_RS04740 (HYQ43_04740) | - | 945949..946146 (+) | 198 | Protein_948 | winged helix-turn-helix domain-containing protein | - |
| HYQ43_RS04745 (HYQ43_04745) | ligA | 946268..948565 (+) | 2298 | WP_024844473.1 | NAD-dependent DNA ligase LigA | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 16266.97 Da Isoelectric Point: 5.0500
>NTDB_id=464947 HYQ43_RS04525 WP_179921091.1 921234..921674(-) (ssb) [Paracoccus pantotrophus strain ACCC10489]
MADLNRVSLLGRLGADPEIRQTQSGEKVATFRIATGEQWKDKSTGEKKERTEWHTVVAWGPLAQIAEKYLAKGKRVYAEG
PQRTRKWQDQSGNDRYSTEVVLSGFGARLDVIDWPEGGGAARGQEESYGGDNLPPSRPDFDDDIPF
MADLNRVSLLGRLGADPEIRQTQSGEKVATFRIATGEQWKDKSTGEKKERTEWHTVVAWGPLAQIAEKYLAKGKRVYAEG
PQRTRKWQDQSGNDRYSTEVVLSGFGARLDVIDWPEGGGAARGQEESYGGDNLPPSRPDFDDDIPF
Nucleotide
Download Length: 441 bp
>NTDB_id=464947 HYQ43_RS04525 WP_179921091.1 921234..921674(-) (ssb) [Paracoccus pantotrophus strain ACCC10489]
ATGGCTGACCTGAACCGCGTTTCCCTTCTCGGCCGACTCGGCGCCGATCCTGAAATCCGACAGACCCAGAGCGGGGAAAA
GGTCGCAACCTTCCGCATCGCCACGGGCGAACAGTGGAAGGACAAGAGCACTGGCGAGAAGAAAGAGCGCACAGAATGGC
ATACGGTAGTCGCTTGGGGACCGCTCGCCCAGATCGCAGAGAAGTATCTGGCGAAAGGCAAGCGCGTCTATGCGGAAGGT
CCGCAGCGCACCCGCAAATGGCAGGACCAGAGCGGCAACGACAGATATTCGACCGAGGTCGTTCTGTCAGGCTTTGGCGC
GCGCCTTGACGTGATCGACTGGCCGGAAGGCGGCGGTGCGGCTCGCGGTCAGGAGGAAAGCTACGGCGGCGACAACCTGC
CCCCGAGCCGTCCTGATTTCGATGACGATATTCCGTTTTGA
ATGGCTGACCTGAACCGCGTTTCCCTTCTCGGCCGACTCGGCGCCGATCCTGAAATCCGACAGACCCAGAGCGGGGAAAA
GGTCGCAACCTTCCGCATCGCCACGGGCGAACAGTGGAAGGACAAGAGCACTGGCGAGAAGAAAGAGCGCACAGAATGGC
ATACGGTAGTCGCTTGGGGACCGCTCGCCCAGATCGCAGAGAAGTATCTGGCGAAAGGCAAGCGCGTCTATGCGGAAGGT
CCGCAGCGCACCCGCAAATGGCAGGACCAGAGCGGCAACGACAGATATTCGACCGAGGTCGTTCTGTCAGGCTTTGGCGC
GCGCCTTGACGTGATCGACTGGCCGGAAGGCGGCGGTGCGGCTCGCGGTCAGGAGGAAAGCTACGGCGGCGACAACCTGC
CCCCGAGCCGTCCTGATTTCGATGACGATATTCCGTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
44.886 |
100 |
0.541 |
| ssb | Glaesserella parasuis strain SC1401 |
39.011 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
36.416 |
100 |
0.432 |
| ssb | Neisseria gonorrhoeae MS11 |
36.416 |
100 |
0.432 |