Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZT35_RS27050 Genome accession   NZ_CP058682
Coordinates   5288856..5289392 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain MBT-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5283856..5294392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT35_RS27030 (HZT35_15930) soxR 5285584..5286048 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HZT35_RS27035 (HZT35_15935) soxS 5286134..5286457 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HZT35_RS27040 (HZT35_15940) pdeC 5286460..5288046 (-) 1587 WP_000019526.1 c-di-GMP phosphodiesterase PdeC -
  HZT35_RS27045 (HZT35_15945) yjcB 5288476..5288757 (+) 282 WP_001341690.1 YjcB family protein -
  HZT35_RS27050 (HZT35_15950) ssb 5288856..5289392 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HZT35_RS27055 (HZT35_15955) uvrA 5289646..5292468 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HZT35_RS27060 (HZT35_15960) yjbR 5292503..5292859 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HZT35_RS27065 (HZT35_15965) yjbQ 5292863..5293279 (-) 417 WP_182111016.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HZT35_RS27070 (HZT35_15970) aphA 5293390..5294103 (-) 714 WP_001375558.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=464941 HZT35_RS27050 WP_000168305.1 5288856..5289392(-) (ssb) [Escherichia coli strain MBT-5]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=464941 HZT35_RS27050 WP_000168305.1 5288856..5289392(-) (ssb) [Escherichia coli strain MBT-5]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489