Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HWV51_RS17045 | Genome accession | NZ_CP058671 |
| Coordinates | 3511416..3511946 (-) | Length | 176 a.a. |
| NCBI ID | WP_000168322.1 | Uniprot ID | - |
| Organism | Salmonella enterica strain MS114 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3511416..3569735 | 3511416..3511946 | within | 0 |
Gene organization within MGE regions
Location: 3511416..3569735
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWV51_RS17045 | ssb | 3511416..3511946 (-) | 531 | WP_000168322.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| HWV51_RS17050 | uvrA | 3512194..3515019 (+) | 2826 | WP_000357723.1 | excinuclease ABC subunit UvrA | - |
| HWV51_RS17055 | - | 3515151..3515606 (+) | 456 | WP_000432194.1 | hypothetical protein | - |
| HWV51_RS17060 | - | 3515593..3515931 (+) | 339 | WP_000146588.1 | hypothetical protein | - |
| HWV51_RS17065 | - | 3515932..3516288 (-) | 357 | WP_000155665.1 | MmcQ/YjbR family DNA-binding protein | - |
| HWV51_RS17070 | - | 3516291..3516707 (-) | 417 | WP_000270392.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| HWV51_RS17075 | aphA | 3516836..3517549 (-) | 714 | WP_000724435.1 | acid phosphatase AphA | - |
| HWV51_RS17080 | tyrB | 3517736..3518929 (-) | 1194 | WP_000486914.1 | aromatic amino acid transaminase | - |
| HWV51_RS17085 | alr | 3519115..3520194 (-) | 1080 | WP_001147296.1 | alanine racemase | - |
| HWV51_RS17090 | dnaB | 3520226..3521641 (-) | 1416 | WP_000918353.1 | replicative DNA helicase | - |
| HWV51_RS17095 | - | 3521706..3522689 (+) | 984 | WP_000235550.1 | quinone oxidoreductase | - |
| HWV51_RS17100 | pspG | 3522864..3523106 (-) | 243 | WP_000891414.1 | envelope stress response protein PspG | - |
| HWV51_RS17105 | dusA | 3523274..3524272 (-) | 999 | WP_001182217.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| HWV51_RS17110 | - | 3524360..3525670 (-) | 1311 | WP_001039337.1 | conjugal transfer protein TraF | - |
| HWV51_RS17115 | zur | 3525917..3526432 (+) | 516 | WP_000416271.1 | zinc uptake transcriptional repressor Zur | - |
| HWV51_RS17120 | - | 3526531..3526740 (-) | 210 | WP_001030592.1 | CsbD family protein | - |
| HWV51_RS17125 | - | 3526762..3526875 (-) | 114 | WP_010989093.1 | hypothetical protein | - |
| HWV51_RS17130 | dinF | 3526872..3528197 (-) | 1326 | WP_001128116.1 | MATE family efflux transporter DinF | - |
| HWV51_RS17135 | lexA | 3528376..3528984 (-) | 609 | WP_000646079.1 | transcriptional repressor LexA | - |
| HWV51_RS17140 | - | 3529093..3529461 (-) | 369 | WP_000002900.1 | diacylglycerol kinase | - |
| HWV51_RS17145 | plsB | 3529632..3532052 (+) | 2421 | WP_000017360.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| HWV51_RS17150 | ubiA | 3532151..3533023 (-) | 873 | WP_000455249.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| HWV51_RS17155 | ubiC | 3533037..3533534 (-) | 498 | WP_000019230.1 | chorismate lyase | - |
| HWV51_RS17160 | malM | 3533715..3534632 (-) | 918 | WP_000782491.1 | maltose operon protein MalM | - |
| HWV51_RS17165 | - | 3534796..3536151 (-) | 1356 | WP_000973641.1 | maltoporin | - |
| HWV51_RS17170 | malK | 3536240..3537349 (-) | 1110 | WP_000179176.1 | maltose/maltodextrin ABC transporter ATP-binding protein MalK | - |
| HWV51_RS17175 | malE | 3537711..3538901 (+) | 1191 | WP_244780057.1 | maltose/maltodextrin ABC transporter substrate-binding protein MalE | - |
| HWV51_RS17180 | malF | 3539033..3540577 (+) | 1545 | WP_000382566.1 | maltose ABC transporter permease MalF | - |
| HWV51_RS17185 | malG | 3540592..3541482 (+) | 891 | WP_001252081.1 | maltose ABC transporter permease MalG | - |
| HWV51_RS17190 | psiE | 3541648..3542058 (-) | 411 | WP_000982752.1 | phosphate-starvation-inducible protein PsiE | - |
| HWV51_RS17195 | - | 3542201..3544297 (-) | 2097 | WP_000750805.1 | YjbH domain-containing protein | - |
| HWV51_RS17200 | - | 3544297..3545031 (-) | 735 | WP_000977977.1 | capsule biosynthesis GfcC family protein | - |
| HWV51_RS17205 | - | 3545028..3545666 (-) | 639 | WP_000824810.1 | YjbF family lipoprotein | - |
| HWV51_RS17210 | yjbE | 3545730..3545972 (-) | 243 | WP_001541297.1 | exopolysaccharide production protein YjbE | - |
| HWV51_RS17215 | pgi | 3546416..3548065 (-) | 1650 | WP_000790028.1 | glucose-6-phosphate isomerase | - |
| HWV51_RS17220 | lysC | 3548410..3549759 (+) | 1350 | WP_000136392.1 | lysine-sensitive aspartokinase 3 | - |
| HWV51_RS17225 | - | 3549890..3550237 (-) | 348 | WP_000615248.1 | Mor transcription activator family protein | - |
| HWV51_RS17230 | - | 3550814..3551101 (+) | 288 | WP_001226439.1 | putative holin | - |
| HWV51_RS17235 | - | 3551104..3551709 (+) | 606 | WP_001270432.1 | lytic transglycosylase domain-containing protein | - |
| HWV51_RS17240 | - | 3551722..3552036 (+) | 315 | WP_000777266.1 | membrane protein | - |
| HWV51_RS17245 | - | 3552195..3552650 (+) | 456 | WP_000449438.1 | Gp37 family protein | - |
| HWV51_RS17250 | - | 3552647..3552844 (+) | 198 | WP_000875314.1 | hypothetical protein | - |
| HWV51_RS17255 | - | 3552834..3554261 (+) | 1428 | WP_000729855.1 | phage tail sheath family protein | - |
| HWV51_RS17260 | - | 3554261..3554785 (+) | 525 | WP_000907494.1 | phage major tail tube protein | - |
| HWV51_RS17265 | - | 3554837..3555154 (+) | 318 | WP_001003640.1 | phage tail assembly protein | - |
| HWV51_RS17270 | - | 3555114..3555242 (+) | 129 | WP_001185654.1 | GpE family phage tail protein | - |
| HWV51_RS17275 | - | 3555339..3557693 (+) | 2355 | WP_001262493.1 | phage tail tape measure protein | - |
| HWV51_RS17280 | - | 3557693..3558646 (+) | 954 | WP_000271419.1 | phage tail protein | - |
| HWV51_RS17285 | - | 3558646..3558855 (+) | 210 | WP_001269714.1 | tail protein X | - |
| HWV51_RS17290 | - | 3558843..3559886 (+) | 1044 | WP_000818148.1 | phage late control D family protein | - |
| HWV51_RS17295 | - | 3559896..3560618 (+) | 723 | WP_000679394.1 | phage baseplate assembly protein V | - |
| HWV51_RS17300 | - | 3560945..3561307 (+) | 363 | WP_000593184.1 | GtrA family protein | - |
| HWV51_RS17305 | - | 3561304..3562233 (+) | 930 | WP_000703631.1 | glycosyltransferase family 2 protein | - |
| HWV51_RS17310 | - | 3562233..3563780 (+) | 1548 | WP_000632049.1 | DUF6056 family protein | - |
| HWV51_RS17315 | - | 3563944..3564303 (+) | 360 | WP_001093501.1 | GPW/gp25 family protein | - |
| HWV51_RS17320 | - | 3564294..3565409 (+) | 1116 | WP_000951742.1 | baseplate J/gp47 family protein | - |
| HWV51_RS17325 | - | 3565402..3566034 (+) | 633 | WP_000359503.1 | phage tail protein I | - |
| HWV51_RS17330 | - | 3566037..3567164 (+) | 1128 | Protein_3390 | tail fiber protein | - |
| HWV51_RS17335 | - | 3567814..3568269 (+) | 456 | WP_000084332.1 | hypothetical protein | - |
| HWV51_RS17340 | - | 3568521..3568810 (+) | 290 | Protein_3392 | hypothetical protein | - |
| HWV51_RS17345 | - | 3569007..3569735 (+) | 729 | WP_000587745.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19074.15 Da Isoelectric Point: 5.2456
>NTDB_id=464887 HWV51_RS17045 WP_000168322.1 3511416..3511946(-) (ssb) [Salmonella enterica strain MS114]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=464887 HWV51_RS17045 WP_000168322.1 3511416..3511946(-) (ssb) [Salmonella enterica strain MS114]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTAATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTAATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
71.978 |
100 |
0.744 |
| ssb | Glaesserella parasuis strain SC1401 |
60.109 |
100 |
0.625 |
| ssb | Neisseria gonorrhoeae MS11 |
46.448 |
100 |
0.483 |
| ssb | Neisseria meningitidis MC58 |
46.409 |
100 |
0.477 |