Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZR24_RS20700 Genome accession   NZ_CP058651
Coordinates   4281294..4281830 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain WCHEC035123     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4276294..4286830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZR24_RS20670 (HZR24_20670) soxR 4277246..4277710 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HZR24_RS20675 (HZR24_20675) soxS 4277796..4278119 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HZR24_RS20680 (HZR24_20680) pdeC 4278122..4278841 (-) 720 Protein_4098 c-di-GMP phosphodiesterase PdeC -
  HZR24_RS20690 (HZR24_20690) pdeC 4279609..4280484 (-) 876 Protein_4100 c-di-GMP phosphodiesterase PdeC -
  HZR24_RS20695 (HZR24_20695) yjcB 4280914..4281195 (+) 282 WP_001295689.1 YjcB family protein -
  HZR24_RS20700 (HZR24_20700) ssb 4281294..4281830 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HZR24_RS20705 (HZR24_20705) uvrA 4282084..4284906 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HZR24_RS20710 (HZR24_20710) yjbR 4284941..4285297 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HZR24_RS20715 (HZR24_20715) yjbQ 4285301..4285717 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HZR24_RS20720 (HZR24_20720) aphA 4285828..4286541 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=464755 HZR24_RS20700 WP_000168305.1 4281294..4281830(-) (ssb) [Escherichia coli strain WCHEC035123]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=464755 HZR24_RS20700 WP_000168305.1 4281294..4281830(-) (ssb) [Escherichia coli strain WCHEC035123]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489