Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ393_RS09310 Genome accession   NZ_CP058627
Coordinates   1967873..1968391 (-) Length   172 a.a.
NCBI ID   WP_179354945.1    Uniprot ID   A0A7H9BI79
Organism   Chitinibacter bivalviorum strain 2T18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1962873..1973391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ393_RS09285 (HQ393_09285) - 1964505..1965428 (+) 924 WP_179354940.1 respiratory chain complex I subunit 1 family protein -
  HQ393_RS09290 (HQ393_09290) - 1965448..1965987 (+) 540 WP_179354941.1 4Fe-4S binding protein -
  HQ393_RS09295 (HQ393_09295) - 1966096..1966623 (+) 528 WP_179354942.1 NADH-quinone oxidoreductase subunit B family protein -
  HQ393_RS09300 (HQ393_09300) - 1966642..1967040 (+) 399 WP_179354943.1 response regulator transcription factor -
  HQ393_RS09305 (HQ393_09305) - 1967176..1967751 (+) 576 WP_179354944.1 HupE/UreJ family protein -
  HQ393_RS09310 (HQ393_09310) ssb 1967873..1968391 (-) 519 WP_179354945.1 single-stranded DNA-binding protein Machinery gene
  HQ393_RS09315 (HQ393_09315) - 1968392..1969756 (-) 1365 WP_179358457.1 MFS transporter -
  HQ393_RS09320 (HQ393_09320) uvrA 1970064..1972922 (+) 2859 WP_218871110.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18470.48 Da        Isoelectric Point: 5.3108

>NTDB_id=464676 HQ393_RS09310 WP_179354945.1 1967873..1968391(-) (ssb) [Chitinibacter bivalviorum strain 2T18]
MASLNKVLLIGNLGKDPESRFLPSGGAVCNFSIATTESWKDKNTGSKQEKTEWHNITMYGRLAEIAGEYLKKGSQVYIEG
RLQTRKWQDKQTGADRYTTEIVADEMKMLGGRGGAGGGMGGASQGGQGGYGGDDFNQEYSAPAAPRQAPQAAPQPAARPA
KSFDDFEDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=464676 HQ393_RS09310 WP_179354945.1 1967873..1968391(-) (ssb) [Chitinibacter bivalviorum strain 2T18]
ATGGCATCGTTAAACAAAGTGCTGCTGATCGGTAACTTGGGCAAAGACCCAGAATCACGTTTCCTACCGAGCGGCGGCGC
GGTGTGCAATTTCTCAATTGCCACCACCGAGAGCTGGAAAGATAAAAACACGGGCTCCAAACAAGAAAAAACCGAATGGC
ACAACATCACGATGTACGGCCGTTTGGCTGAAATCGCCGGTGAATACCTGAAAAAAGGTAGCCAAGTGTATATCGAAGGC
CGTCTGCAAACGCGCAAATGGCAAGACAAACAAACCGGCGCAGATCGCTACACGACTGAAATCGTGGCCGATGAAATGAA
AATGCTCGGCGGTCGCGGTGGCGCGGGTGGCGGTATGGGCGGTGCTTCACAAGGTGGTCAAGGCGGCTACGGCGGCGATG
ATTTCAACCAAGAATACAGTGCGCCAGCAGCACCACGCCAAGCACCGCAAGCAGCGCCACAGCCTGCTGCGCGCCCAGCG
AAAAGCTTTGATGACTTTGAAGACGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H9BI79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.044

100

0.593
  ssb Neisseria meningitidis MC58

53.371

100

0.552
  ssb Neisseria gonorrhoeae MS11

53.371

100

0.552
  ssb Glaesserella parasuis strain SC1401

49.18

100

0.523