Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HZF20_RS12490 Genome accession   NZ_CP058618
Coordinates   2577702..2578238 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain JS316     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2572702..2583238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZF20_RS12460 (HZF20_12445) soxR 2573654..2574118 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HZF20_RS12465 (HZF20_12450) soxS 2574204..2574527 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HZF20_RS12470 (HZF20_12455) pdeC 2574530..2575249 (-) 720 Protein_2474 c-di-GMP phosphodiesterase PdeC -
  HZF20_RS12480 (HZF20_12465) pdeC 2576017..2576892 (-) 876 Protein_2476 c-di-GMP phosphodiesterase PdeC -
  HZF20_RS12485 (HZF20_12470) yjcB 2577322..2577603 (+) 282 WP_001295689.1 YjcB family protein -
  HZF20_RS12490 (HZF20_12475) ssb 2577702..2578238 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HZF20_RS12495 (HZF20_12480) uvrA 2578492..2581314 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HZF20_RS12500 (HZF20_12485) yjbR 2581349..2581705 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HZF20_RS12505 (HZF20_12490) yjbQ 2581709..2582125 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HZF20_RS12510 (HZF20_12495) aphA 2582236..2582949 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=464641 HZF20_RS12490 WP_000168305.1 2577702..2578238(-) (ssb) [Escherichia coli strain JS316]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=464641 HZF20_RS12490 WP_000168305.1 2577702..2578238(-) (ssb) [Escherichia coli strain JS316]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489