Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HZR13_RS12910 | Genome accession | NZ_CP058613 |
| Coordinates | 2534823..2535326 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain 128254 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2514260..2539389 | 2534823..2535326 | within | 0 |
Gene organization within MGE regions
Location: 2514260..2539389
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZR13_RS12750 (HZR13_12750) | - | 2514260..2514511 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| HZR13_RS12755 (HZR13_12755) | - | 2514811..2515074 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| HZR13_RS12760 (HZR13_12760) | - | 2515212..2515784 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| HZR13_RS12765 (HZR13_12765) | - | 2515965..2516333 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| HZR13_RS12770 (HZR13_12770) | selX | 2516702..2517313 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| HZR13_RS12775 (HZR13_12775) | - | 2517519..2518220 (+) | 702 | Protein_2466 | tyrosine-type recombinase/integrase | - |
| HZR13_RS12780 (HZR13_12780) | - | 2518259..2519197 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| HZR13_RS12785 (HZR13_12785) | - | 2519737..2520180 (-) | 444 | WP_000022885.1 | GNAT family N-acetyltransferase | - |
| HZR13_RS12790 (HZR13_12790) | - | 2520299..2520625 (-) | 327 | WP_000679756.1 | DUF1433 domain-containing protein | - |
| HZR13_RS12795 (HZR13_12795) | - | 2520718..2521929 (+) | 1212 | WP_009558370.1 | hypothetical protein | - |
| HZR13_RS12800 (HZR13_12800) | - | 2521931..2522320 (+) | 390 | WP_000362902.1 | hypothetical protein | - |
| HZR13_RS12805 (HZR13_12805) | - | 2522437..2522796 (+) | 360 | WP_000935290.1 | hypothetical protein | - |
| HZR13_RS12810 (HZR13_12810) | - | 2522871..2523440 (-) | 570 | WP_159343919.1 | terminase small subunit | - |
| HZR13_RS12815 (HZR13_12815) | - | 2523437..2523649 (-) | 213 | WP_078065371.1 | pathogenicity island family protein | - |
| HZR13_RS12820 (HZR13_12820) | - | 2523781..2524308 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| HZR13_RS12825 (HZR13_12825) | - | 2524359..2524577 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| HZR13_RS12830 (HZR13_12830) | - | 2524595..2525173 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| HZR13_RS12835 (HZR13_12835) | - | 2525185..2525526 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| HZR13_RS12840 (HZR13_12840) | - | 2525873..2526514 (-) | 642 | WP_048665662.1 | pathogenicity island protein | - |
| HZR13_RS12845 (HZR13_12845) | - | 2526516..2526788 (-) | 273 | WP_001149389.1 | hypothetical protein | - |
| HZR13_RS12850 (HZR13_12850) | - | 2526775..2527578 (-) | 804 | WP_000148373.1 | bifunctional DNA primase/polymerase | - |
| HZR13_RS12855 (HZR13_12855) | - | 2527754..2529370 (-) | 1617 | WP_048665658.1 | hypothetical protein | - |
| HZR13_RS12860 (HZR13_12860) | tscT | 2529445..2529744 (-) | 300 | WP_048665656.1 | type II toxin-antitoxin system toxin TscT | - |
| HZR13_RS12865 (HZR13_12865) | - | 2529745..2530128 (-) | 384 | WP_000403843.1 | hypothetical protein | - |
| HZR13_RS12870 (HZR13_12870) | - | 2530088..2530333 (-) | 246 | WP_001171847.1 | hypothetical protein | - |
| HZR13_RS12875 (HZR13_12875) | - | 2530318..2530473 (-) | 156 | WP_000784886.1 | hypothetical protein | - |
| HZR13_RS12880 (HZR13_12880) | - | 2530485..2530757 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| HZR13_RS12885 (HZR13_12885) | - | 2530758..2530970 (-) | 213 | WP_048665654.1 | helix-turn-helix transcriptional regulator | - |
| HZR13_RS12890 (HZR13_12890) | - | 2531114..2531812 (+) | 699 | WP_048665652.1 | helix-turn-helix domain-containing protein | - |
| HZR13_RS12895 (HZR13_12895) | - | 2532265..2533479 (+) | 1215 | WP_048665650.1 | site-specific integrase | - |
| HZR13_RS12900 (HZR13_12900) | - | 2533515..2534141 (+) | 627 | WP_233231932.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| HZR13_RS12905 (HZR13_12905) | rpsR | 2534529..2534771 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| HZR13_RS12910 (HZR13_12910) | ssbA | 2534823..2535326 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| HZR13_RS12915 (HZR13_12915) | rpsF | 2535347..2535643 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| HZR13_RS12920 (HZR13_12920) | - | 2535887..2536078 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| HZR13_RS12925 (HZR13_12925) | ychF | 2536164..2537261 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| HZR13_RS12930 (HZR13_12930) | - | 2537273..2537476 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| HZR13_RS12935 (HZR13_12935) | - | 2537506..2538387 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| HZR13_RS12940 (HZR13_12940) | - | 2538544..2539389 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=464574 HZR13_RS12910 WP_000934799.1 2534823..2535326(-) (ssbA) [Staphylococcus aureus strain 128254]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=464574 HZR13_RS12910 WP_000934799.1 2534823..2535326(-) (ssbA) [Staphylococcus aureus strain 128254]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |