Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JNO62_RS08090 Genome accession   NZ_CP069245
Coordinates   1730955..1731788 (-) Length   277 a.a.
NCBI ID   WP_016721789.1    Uniprot ID   A0ABX7ZTT2
Organism   Ralstonia pseudosolanacearum strain PeaFJ1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1725955..1736788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO62_RS08075 (JNO62_08010) - 1727697..1728413 (+) 717 WP_071507219.1 hypothetical protein -
  JNO62_RS08080 (JNO62_08015) - 1728453..1728656 (+) 204 WP_011001567.1 DUF465 domain-containing protein -
  JNO62_RS08085 (JNO62_08020) - 1728736..1730877 (+) 2142 WP_011001568.1 ATP-dependent DNA helicase -
  JNO62_RS08090 (JNO62_08025) comL 1730955..1731788 (-) 834 WP_016721789.1 outer membrane protein assembly factor BamD Machinery gene
  JNO62_RS08095 (JNO62_08030) - 1731804..1732916 (+) 1113 WP_071012117.1 RluA family pseudouridine synthase -
  JNO62_RS08100 (JNO62_08035) pgeF 1732900..1733703 (+) 804 WP_011001571.1 peptidoglycan editing factor PgeF -
  JNO62_RS08105 (JNO62_08040) - 1733743..1733973 (-) 231 WP_016721791.1 hypothetical protein -
  JNO62_RS08110 (JNO62_08045) phaC 1734257..1736053 (+) 1797 WP_111374616.1 class I poly(R)-hydroxyalkanoic acid synthase -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 31455.54 Da        Isoelectric Point: 8.6499

>NTDB_id=464574 JNO62_RS08090 WP_016721789.1 1730955..1731788(-) (comL) [Ralstonia pseudosolanacearum strain PeaFJ1]
MSVTSMKLARIRARIGAVLAAGVACLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGP
FAQQAQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDA
FKTLITRFPNSKYAPDAAQRMQYIVNAMAEHEVQAARYYYRRGAYLAATNRAQEAIKDYDRAPAVEEGLYIMMKSYEALG
MKDLRDDTERIIKQNYPNSDFLLYGQRKKAKPWYQWW

Nucleotide


Download         Length: 834 bp        

>NTDB_id=464574 JNO62_RS08090 WP_016721789.1 1730955..1731788(-) (comL) [Ralstonia pseudosolanacearum strain PeaFJ1]
ATGTCGGTCACGAGCATGAAGCTGGCGCGCATTCGCGCGCGAATCGGAGCGGTATTGGCGGCGGGCGTTGCATGCCTCGC
GATCTCGGCCTGCGGCATCATGCCGGAACAACAGGACGAGACCGCAGGCTGGTCGGCCAACAAATTATATTCGGAAGCGA
AGGACGCGCTCGACGGCGGCGACTACAGCAAGGCCGTCAAGTACTACGAAAAGCTCGAGAGCCGCTATCCGTTCGGGCCC
TTTGCCCAGCAGGCGCAGATCGAAACCGCCTACGCCAATTACAAGGACGGCGAAACCGCCGCCGCGCTGGCTGCGGTCGA
TCGCTTCATCCAGCTGCACCCGAATCACCCCAGCGTCGATTACGCCTACTACCTCAAGGGCCTGATCAACTTCAACGACA
ACCTGGGCTGGCTGGGCCGCTTCTCCAACCAGGACCTGAGCGAGCGCGATCCGAAGGCGGCCCGCGCCGCCTACGATGCG
TTCAAGACGCTGATCACGCGTTTCCCGAACAGCAAGTACGCGCCGGACGCCGCGCAGCGCATGCAGTACATCGTCAACGC
GATGGCCGAGCATGAAGTGCAGGCCGCCCGCTACTACTACCGCCGCGGTGCCTACCTGGCCGCCACCAACCGCGCGCAGG
AAGCCATCAAGGATTACGATCGCGCGCCGGCCGTGGAAGAAGGGCTGTACATCATGATGAAGTCCTACGAAGCGCTTGGC
ATGAAAGACCTGCGCGACGACACCGAGCGCATCATCAAGCAGAACTATCCGAACAGCGATTTCCTGCTGTACGGACAGCG
CAAGAAGGCCAAGCCGTGGTACCAGTGGTGGTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(46-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.348

95.307

0.451
  comL Neisseria gonorrhoeae MS11

45.833

95.307

0.437