Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HYH18_RS01220 Genome accession   NZ_CP058544
Coordinates   252197..252721 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain S161-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 247197..257721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYH18_RS01210 - 247645..249903 (-) 2259 WP_008807289.1 TonB-dependent siderophore receptor -
  HYH18_RS01215 - 250492..252072 (+) 1581 WP_094310133.1 lytic transglycosylase F -
  HYH18_RS01220 ssb 252197..252721 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HYH18_RS01225 uvrA 252973..255798 (+) 2826 WP_237085246.1 excinuclease ABC subunit UvrA -
  HYH18_RS01230 - 255799..256155 (-) 357 WP_002884953.1 MmcQ/YjbR family DNA-binding protein -
  HYH18_RS01235 - 256159..256575 (-) 417 WP_002884951.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HYH18_RS01240 aphA 256706..257419 (-) 714 WP_004151745.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=464176 HYH18_RS01220 WP_004151744.1 252197..252721(-) (ssb) [Klebsiella pneumoniae strain S161-2]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=464176 HYH18_RS01220 WP_004151744.1 252197..252721(-) (ssb) [Klebsiella pneumoniae strain S161-2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCACAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCGCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCCCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5