Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HXS75_RS22895 Genome accession   NZ_CP058533
Coordinates   5073557..5074072 (+) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas sivasensis strain W-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5068557..5079072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS75_RS22880 bfr 5068612..5069076 (+) 465 WP_032884537.1 bacterioferritin -
  HXS75_RS22885 uvrA 5069140..5071974 (-) 2835 WP_032884538.1 excinuclease ABC subunit UvrA -
  HXS75_RS22890 - 5072153..5073547 (+) 1395 WP_095186176.1 MFS transporter -
  HXS75_RS22895 ssb 5073557..5074072 (+) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  HXS75_RS22900 - 5074195..5075001 (+) 807 WP_179179819.1 hypothetical protein -
  HXS75_RS22905 tam 5075091..5075852 (+) 762 WP_095186178.1 trans-aconitate 2-methyltransferase -
  HXS75_RS22910 - 5075873..5076436 (-) 564 WP_032884542.1 cysteine hydrolase family protein -
  HXS75_RS22915 - 5076533..5077492 (+) 960 WP_095186179.1 GlxA family transcriptional regulator -
  HXS75_RS22920 - 5077664..5078773 (+) 1110 WP_179179820.1 DUF3182 family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=464172 HXS75_RS22895 WP_003232445.1 5073557..5074072(+) (ssb) [Pseudomonas sivasensis strain W-6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=464172 HXS75_RS22895 WP_003232445.1 5073557..5074072(+) (ssb) [Pseudomonas sivasensis strain W-6]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTGTCGATGTTTGGCAAGGTTGCAGAGATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGTCGTCCACAAGGCGATCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCGCGTCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAACAGGCCGCTCCGCAACCGGCTCCG
GATTTCGATAGCTTTGATGACGATATTCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474