Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HYD35_RS24955 Genome accession   NZ_CP058358
Coordinates   5088924..5089448 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain KP486     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5083924..5094448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYD35_RS24945 (HYD35_24940) - 5084373..5086631 (-) 2259 WP_021441030.1 TonB-dependent siderophore receptor -
  HYD35_RS24950 (HYD35_24945) - 5087219..5088799 (+) 1581 WP_004192628.1 lytic transglycosylase F -
  HYD35_RS24955 (HYD35_24950) ssb 5088924..5089448 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HYD35_RS24960 (HYD35_24955) uvrA 5089700..5092525 (+) 2826 WP_023287013.1 excinuclease ABC subunit UvrA -
  HYD35_RS24965 (HYD35_24960) - 5092526..5092882 (-) 357 WP_004206305.1 MmcQ/YjbR family DNA-binding protein -
  HYD35_RS24970 (HYD35_24965) - 5092886..5093302 (-) 417 WP_004206303.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HYD35_RS24975 (HYD35_24970) aphA 5093434..5094147 (-) 714 WP_004206302.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=464088 HYD35_RS24955 WP_004151744.1 5088924..5089448(-) (ssb) [Klebsiella pneumoniae strain KP486]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=464088 HYD35_RS24955 WP_004151744.1 5088924..5089448(-) (ssb) [Klebsiella pneumoniae strain KP486]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCGCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCCCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5