Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   JNE32_RS15635 Genome accession   NZ_CP068982
Coordinates   2921828..2922523 (-) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis strain pb2441     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2916828..2927523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS15610 (JNE32_15525) minD 2917764..2918570 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  JNE32_RS15615 (JNE32_15530) minC 2918572..2919252 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  JNE32_RS15620 (JNE32_15535) mreD 2919305..2919823 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  JNE32_RS15625 (JNE32_15540) mreC 2919820..2920692 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  JNE32_RS15630 (JNE32_15545) mreB 2920723..2921736 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  JNE32_RS15635 (JNE32_15550) ysxA/radC 2921828..2922523 (-) 696 WP_015251546.1 DNA repair protein RadC Machinery gene
  JNE32_RS15640 (JNE32_15555) maf 2922560..2923129 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  JNE32_RS15645 (JNE32_15560) spoIIB 2923282..2924277 (-) 996 WP_038427816.1 stage II sporulation protein SpoIIB -
  JNE32_RS15650 (JNE32_15565) comC 2924411..2925157 (-) 747 WP_072692713.1 A24 family peptidase Machinery gene
  JNE32_RS15655 (JNE32_15570) folC 2925299..2926591 (-) 1293 WP_038427817.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=464046 JNE32_RS15635 WP_015251546.1 2921828..2922523(-) (ysxA/radC) [Bacillus subtilis strain pb2441]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=464046 JNE32_RS15635 WP_015251546.1 2921828..2922523(-) (ysxA/radC) [Bacillus subtilis strain pb2441]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCACAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTCGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAGGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424