Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HXT67_RS22560 Genome accession   NZ_CP058354
Coordinates   4953275..4953772 (-) Length   165 a.a.
NCBI ID   WP_014495108.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain 5038     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4948275..4958772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXT67_RS22550 gyrA 4949762..4952506 (-) 2745 WP_014495110.1 DNA gyrase subunit A -
  HXT67_RS22555 - 4952675..4953073 (-) 399 WP_014495109.1 DUF2306 domain-containing protein -
  HXT67_RS22560 ssb 4953275..4953772 (-) 498 WP_014495108.1 single-stranded DNA-binding protein Machinery gene
  HXT67_RS22565 - 4954224..4954991 (+) 768 WP_014495107.1 outer membrane beta-barrel protein -
  HXT67_RS22570 - 4955225..4955914 (+) 690 WP_028153430.1 outer membrane protein -
  HXT67_RS22575 - 4956138..4956890 (+) 753 WP_014495105.1 outer membrane beta-barrel protein -
  HXT67_RS22580 - 4957033..4957791 (+) 759 WP_028169490.1 outer membrane beta-barrel protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17595.55 Da        Isoelectric Point: 6.9877

>NTDB_id=464043 HXT67_RS22560 WP_014495108.1 4953275..4953772(-) (ssb) [Bradyrhizobium japonicum strain 5038]
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLDGRGGGSGGGSFGDEPGGDFGSSGPVSSAPRRAVAAGGGGRNSDMD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=464043 HXT67_RS22560 WP_014495108.1 4953275..4953772(-) (ssb) [Bradyrhizobium japonicum strain 5038]
ATGGCGGGAAGCGTCAACAAGGTCATTCTGGTTGGAAATCTCGGCAAGGATCCCGAAATCCGCCGCACCCAGGACGGGCG
GCCGATCGCGAATTTGAGCATCGCCACCTCGGAGACCTGGCGCGACAAGAACAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCATCGCGTCGTGATCTTCAATGAAGGGCTCTGCAAGGTCGCCGAGCAGTACCTGAAGAAGGGCGCGAAGGTTTACATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGAGCGGCGTCGAGAAGTACTCCACCGAGGTCGTGCTCCAGGGCTT
CAACTCGACCCTGACGATGCTCGACGGCCGCGGCGGCGGCAGTGGAGGCGGCAGCTTCGGCGACGAGCCGGGCGGCGATT
TCGGCTCCTCTGGTCCCGTCAGCAGCGCGCCGCGCCGTGCCGTTGCCGCCGGCGGCGGTGGCCGCAACAGCGACATGGAC
GACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.149

100

0.539
  ssb Glaesserella parasuis strain SC1401

44.444

100

0.509
  ssb Neisseria meningitidis MC58

37.989

100

0.412
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.412