Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FE840_RS13445 Genome accession   NZ_CP058350
Coordinates   2759316..2759846 (+) Length   176 a.a.
NCBI ID   WP_138289727.1    Uniprot ID   -
Organism   Peteryoungia desertarenae strain ADMK78     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2754316..2764846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE840_RS13440 (FE840_013440) uvrA 2756103..2759024 (-) 2922 WP_138289725.1 excinuclease ABC subunit UvrA -
  FE840_RS13445 (FE840_013445) ssb 2759316..2759846 (+) 531 WP_138289727.1 single-stranded DNA-binding protein Machinery gene
  FE840_RS13450 (FE840_013450) - 2759909..2760538 (-) 630 WP_138289729.1 MarC family protein -
  FE840_RS13455 (FE840_013455) gyrA 2760730..2763522 (+) 2793 WP_138289731.1 DNA gyrase subunit A -
  FE840_RS21060 - 2763638..2763772 (-) 135 WP_281366521.1 hypothetical protein -
  FE840_RS13460 (FE840_013460) - 2763838..2763990 (-) 153 WP_171033828.1 hypothetical protein -
  FE840_RS13465 (FE840_013465) - 2764075..2764221 (-) 147 WP_171033829.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18799.45 Da        Isoelectric Point: 5.3093

>NTDB_id=464014 FE840_RS13445 WP_138289727.1 2759316..2759846(+) (ssb) [Peteryoungia desertarenae strain ADMK78]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLRIATSESWRDRNSGERKEKTEWHTVVIFNEGLCKVAEQYLKKGSTVYI
EGQLQTRKWQDQNGNDRYSTEVVLQGFNSTLTMLGGRGDSGGSRSNDFGGGDYGGGYDGGYDAPAPSRGGSSGGGNRGGS
APSGGFSRDLDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=464014 FE840_RS13445 WP_138289727.1 2759316..2759846(+) (ssb) [Peteryoungia desertarenae strain ADMK78]
ATGGCTGGAAGCGTCAACAAGGTCATTTTGATCGGCAATCTCGGAGCTGATCCCGAAATTCGCCGGACTCAAGACGGGCG
CCCGATTGCTAACCTGCGCATTGCGACCTCTGAAAGCTGGCGTGACCGGAACAGCGGCGAGCGCAAGGAGAAGACCGAAT
GGCACACCGTGGTCATCTTCAATGAGGGCCTTTGCAAGGTCGCAGAACAGTATCTGAAGAAGGGTTCGACAGTCTATATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGATCAGAACGGCAATGATCGCTACTCGACGGAGGTGGTTCTGCAAGGCTT
CAACTCGACGCTGACGATGCTGGGTGGACGTGGTGACAGTGGCGGTTCGCGCAGCAATGACTTCGGCGGTGGTGATTATG
GTGGGGGCTATGACGGCGGCTATGACGCGCCGGCTCCATCCCGTGGTGGTTCATCTGGTGGCGGGAACCGTGGCGGCAGC
GCCCCGTCAGGCGGCTTCTCACGCGATCTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.601

98.295

0.517
  ssb Glaesserella parasuis strain SC1401

43.655

100

0.489
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.42
  ssb Neisseria meningitidis MC58

39.785

100

0.42