Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HW090_RS12185 Genome accession   NZ_CP058349
Coordinates   2774700..2775203 (+) Length   167 a.a.
NCBI ID   WP_179113771.1    Uniprot ID   A0A7L5RWS2
Organism   Pseudomonas sp. ABC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2769700..2780203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW090_RS12175 (HW090_12175) uvrA 2769986..2772820 (-) 2835 WP_179113769.1 excinuclease ABC subunit UvrA -
  HW090_RS12180 (HW090_12180) - 2773183..2774550 (+) 1368 WP_179113770.1 MFS transporter -
  HW090_RS12185 (HW090_12185) ssb 2774700..2775203 (+) 504 WP_179113771.1 single-stranded DNA-binding protein Machinery gene
  HW090_RS12190 (HW090_12190) - 2775349..2776233 (+) 885 WP_179113772.1 sugar nucleotide-binding protein -
  HW090_RS12195 (HW090_12195) - 2776226..2777155 (+) 930 WP_179113773.1 NAD-dependent epimerase/dehydratase family protein -
  HW090_RS12200 (HW090_12200) - 2777310..2778728 (-) 1419 WP_179113774.1 IS1182 family transposase -
  HW090_RS12205 (HW090_12205) - 2778844..2779515 (-) 672 WP_179113775.1 OmpW family protein -
  HW090_RS12210 (HW090_12210) - 2779642..2780154 (-) 513 WP_179113776.1 DUF3299 domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18522.58 Da        Isoelectric Point: 5.9455

>NTDB_id=464001 HW090_RS12185 WP_179113771.1 2774700..2775203(+) (ssb) [Pseudomonas sp. ABC1]
MARGVNKVILVGTCGQDPETRYLPNGNAVTNLSLATSEQWTDKQSGQRVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRNNDAGEGGAPRQPRPAAAPRPQASQPQQPAQPQQRPAAQPAQDYDS
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=464001 HW090_RS12185 WP_179113771.1 2774700..2775203(+) (ssb) [Pseudomonas sp. ABC1]
ATGGCCCGTGGGGTTAATAAAGTCATTCTGGTGGGTACCTGTGGACAGGACCCGGAAACCCGCTACCTGCCCAATGGCAA
TGCGGTCACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGAGCGGCCAGCGTGTCGAGCGTACCGAGT
GGCACCGTGTCTCCCTGTTCGGCAAGGTCGCGGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGGCGTAACAACGATGCGGGCGAAGGTGGCGCGCCACGGCAGCCTCGCCCGGCCGCAGCTCCGC
GTCCGCAGGCCAGCCAGCCGCAACAACCCGCCCAGCCTCAGCAGCGCCCAGCGGCCCAGCCGGCCCAGGATTACGACAGC
TTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5RWS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.111

100

0.605
  ssb Neisseria meningitidis MC58

49.171

100

0.533
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.527
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.515