Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HW988_RS07715 Genome accession   NZ_CP058348
Coordinates   1577119..1577559 (-) Length   146 a.a.
NCBI ID   WP_142699899.1    Uniprot ID   -
Organism   Bdellovibrio sp. KM01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1572119..1582559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW988_RS07700 (HW988_07705) - 1574070..1574939 (-) 870 WP_181606965.1 trypsin-like serine protease -
  HW988_RS07705 (HW988_07710) - 1575097..1576056 (-) 960 WP_181606967.1 hypothetical protein -
  HW988_RS07710 (HW988_07715) - 1576053..1576478 (-) 426 WP_181606968.1 hypothetical protein -
  HW988_RS07715 (HW988_07720) ssb 1577119..1577559 (-) 441 WP_142699899.1 single-stranded DNA-binding protein Machinery gene
  HW988_RS07720 (HW988_07725) gspN 1577724..1578689 (-) 966 WP_142699900.1 type II secretion system protein GspN -
  HW988_RS07725 (HW988_07730) - 1578689..1579378 (-) 690 WP_181606969.1 hypothetical protein -
  HW988_RS07730 (HW988_07735) pilM 1579375..1581045 (-) 1671 WP_181606970.1 pilus assembly protein PilM -
  HW988_RS07735 (HW988_07740) - 1581140..1582399 (-) 1260 WP_255490266.1 general secretion pathway protein GspK -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15886.54 Da        Isoelectric Point: 6.4739

>NTDB_id=463979 HW988_RS07715 WP_142699899.1 1577119..1577559(-) (ssb) [Bdellovibrio sp. KM01]
MSGVNKVIIVGRLGADPEVKAIGSGSTVARLNIATSESWVKDGQRQEKTEWHRVTVWGKLAEICGKHLSKGRQVYVEGKL
QTRSWEDQQGQKRYATEIVANTVQFLGAAGAEAGSRSNNNSGGGDDFNFNDFGPEPSFNSNDEIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=463979 HW988_RS07715 WP_142699899.1 1577119..1577559(-) (ssb) [Bdellovibrio sp. KM01]
ATGTCTGGAGTAAATAAAGTTATTATCGTAGGTCGTCTTGGTGCTGATCCAGAAGTGAAAGCAATCGGAAGTGGGAGCAC
TGTAGCTCGCCTTAACATCGCAACAAGCGAATCATGGGTTAAAGACGGTCAACGTCAGGAAAAAACTGAATGGCACCGTG
TAACTGTATGGGGCAAATTGGCAGAAATCTGCGGCAAACACCTTTCTAAAGGTCGCCAAGTTTACGTTGAAGGTAAACTT
CAAACTCGCTCATGGGAAGACCAACAAGGACAAAAACGCTACGCGACTGAAATCGTGGCTAACACTGTTCAATTCTTGGG
TGCTGCTGGTGCCGAGGCTGGTTCTCGCTCTAACAACAACTCGGGTGGCGGTGACGATTTCAATTTCAACGACTTCGGCC
CAGAACCAAGCTTCAACTCAAACGACGAAATTCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

41.989

100

0.521
  ssb Vibrio cholerae strain A1552

55.085

80.822

0.445
  ssb Neisseria gonorrhoeae MS11

46.721

83.562

0.39
  ssb Neisseria meningitidis MC58

46.721

83.562

0.39