Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   HXP32_RS01525 Genome accession   NZ_CP058340
Coordinates   306775..308337 (+) Length   520 a.a.
NCBI ID   WP_065980050.1    Uniprot ID   -
Organism   Campylobacter coli strain 20A420     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301775..313337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS01505 (HXP32_01510) ctsR 303893..304204 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  HXP32_RS01510 (HXP32_01515) mshL 304182..305600 (+) 1419 Protein_298 pilus (MSHA type) biogenesis protein MshL -
  HXP32_RS01515 (HXP32_01520) ctsP 305593..306189 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  HXP32_RS01520 (HXP32_01525) - 306186..306782 (+) 597 WP_002779313.1 CDC27 family protein -
  HXP32_RS01525 (HXP32_01530) ctsE 306775..308337 (+) 1563 WP_065980050.1 GspE/PulE family protein Machinery gene
  HXP32_RS01530 (HXP32_01535) - 308324..309498 (+) 1175 Protein_302 type II secretion system F family protein -
  HXP32_RS01535 (HXP32_01540) - 309495..310259 (-) 765 WP_002781157.1 TSUP family transporter -
  HXP32_RS01540 (HXP32_01545) - 310262..311026 (-) 765 WP_002781156.1 TIGR02757 family protein -
  HXP32_RS01545 (HXP32_01550) flgK 311043..312869 (-) 1827 WP_065980049.1 flagellar hook-associated protein FlgK -
  HXP32_RS01550 (HXP32_01555) - 312879..313313 (-) 435 WP_002779263.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59858.45 Da        Isoelectric Point: 5.6206

>NTDB_id=463907 HXP32_RS01525 WP_065980050.1 306775..308337(+) (ctsE) [Campylobacter coli strain 20A420]
MIERFLFEDYINGKITLEQIDREHKIDSEIFLKALASDKNISYSTLEELDLSLGEKFPCSFLFKFKILPILSKENTLHIA
SSKPCSLELLDEIRIFYEVKNIEVLIASEFKIMKFLYKLQVREKLKNLSTNLRLEWKENRSQDEQSYISQIFDFILDEIL
EFNPSDIHIEARENDALIRFRVDGILREFACLEKDIYEALVFHIKFLSQLNVAESRKAQDGNFELKIKENRYDFRISSLP
LQNGESIVIRILKHNEEILDLENLNLGEKNLTILKKALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPI
EYKMPLIQQILLNPKAGLEFNNALRAILRQDPDIIMIGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTIDRLIDMSA
KPYLIASALRLIIAQRLVRKLCPKCKQKSTKVYEIKGDFFEAKGCEYCHHSGYQGRELISECLYIDEEIAQVIREGGYKN
KILELAKAKGFQSMFEQGLQKAKEGITSIDELLRVLNEAL

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=463907 HXP32_RS01525 WP_065980050.1 306775..308337(+) (ctsE) [Campylobacter coli strain 20A420]
ATGATTGAGCGATTTTTATTTGAAGATTATATTAATGGTAAAATCACCCTTGAGCAAATTGATCGTGAGCATAAAATCGA
TAGTGAAATTTTTCTAAAAGCTTTGGCTAGTGATAAAAATATTTCTTATTCTACTTTAGAGGAACTTGATCTTAGTTTGG
GTGAAAAATTTCCATGTAGTTTTCTTTTTAAATTTAAAATCTTGCCCATTTTAAGTAAAGAAAATACACTTCATATAGCA
AGCTCCAAACCTTGTTCTTTAGAGCTTTTAGATGAGATTAGAATTTTTTATGAAGTTAAGAATATAGAAGTTTTGATCGC
AAGTGAATTTAAGATTATGAAATTTTTATATAAACTTCAAGTTAGAGAAAAACTTAAAAATTTAAGCACAAATCTTAGAT
TAGAATGGAAAGAAAATAGAAGTCAAGATGAGCAAAGTTACATCAGTCAAATTTTTGATTTTATACTCGATGAAATTCTT
GAATTTAATCCTAGTGATATACATATAGAAGCAAGAGAAAATGATGCTTTGATAAGATTTAGAGTAGATGGAATTTTACG
CGAATTTGCTTGTCTTGAAAAAGATATTTATGAGGCTTTGGTTTTTCATATTAAATTTTTATCGCAGCTTAATGTTGCAG
AATCAAGAAAGGCACAAGATGGAAATTTTGAGCTTAAAATCAAAGAAAATAGATATGATTTTAGGATTTCATCTTTGCCT
TTGCAAAATGGCGAAAGCATTGTGATAAGAATTTTAAAACACAACGAAGAAATTTTGGATTTAGAAAATTTAAATTTGGG
CGAAAAAAATCTTACAATTCTAAAAAAAGCCCTATACAACCCTTATGGAATGATTTTACTAACAGGTCCTACAGGAAGTG
GAAAAAGTACAAGTTTATATGCTTGTTTAAATGAGCTAAAAAGCATAGAAAAGAAAATAATTTCTGTGGAAGATCCTATA
GAATATAAAATGCCTTTAATTCAGCAAATTTTGCTAAATCCAAAAGCAGGGCTTGAATTTAATAATGCCCTAAGAGCTAT
TTTAAGACAAGATCCTGATATTATCATGATAGGAGAAATCAGAGATGAGGAGAGTCTTGATATAGCGATTAAGGCTTCTT
TAACAGGACACTTGCTTTTAAGTACCTTGCATACAAATAATGCCATTTCTACCATAGATAGATTAATTGACATGAGTGCA
AAGCCTTATTTGATCGCTTCTGCTTTAAGGCTTATCATTGCCCAGCGTTTAGTGCGCAAACTTTGTCCTAAATGCAAGCA
AAAAAGCACTAAGGTTTATGAAATAAAAGGTGATTTTTTTGAAGCTAAAGGCTGCGAGTATTGTCATCATAGTGGATATC
AAGGTAGAGAACTCATCAGTGAGTGTTTATATATCGATGAGGAAATAGCTCAAGTTATTAGAGAGGGTGGTTATAAAAAT
AAAATTCTAGAGCTTGCTAAAGCAAAGGGTTTTCAAAGTATGTTTGAGCAAGGTTTGCAAAAAGCAAAAGAGGGTATAAC
TAGCATAGATGAGCTTTTAAGGGTACTTAATGAAGCTTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-123)

Type II/IV secretion system protein (T2SSE)

(155-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

67.188

98.462

0.662
  pilB Acinetobacter baylyi ADP1

35.179

100

0.379
  pilB Legionella pneumophila strain ERS1305867

40.412

93.269

0.377