Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   HXP32_RS01505 Genome accession   NZ_CP058340
Coordinates   303893..304204 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain 20A420     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298893..309204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS08990 - 299573..299674 (+) 102 WP_407842777.1 HAD hydrolase-like protein -
  HXP32_RS08995 - 299938..300060 (+) 123 WP_407842778.1 HAD hydrolase-like protein -
  HXP32_RS09000 - 300045..300116 (+) 72 Protein_295 HAD family hydrolase -
  HXP32_RS01500 (HXP32_01505) nifJ 300318..303869 (+) 3552 Protein_296 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  HXP32_RS01505 (HXP32_01510) ctsR 303893..304204 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  HXP32_RS01510 (HXP32_01515) mshL 304182..305600 (+) 1419 Protein_298 pilus (MSHA type) biogenesis protein MshL -
  HXP32_RS01515 (HXP32_01520) ctsP 305593..306189 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  HXP32_RS01520 (HXP32_01525) - 306186..306782 (+) 597 WP_002779313.1 CDC27 family protein -
  HXP32_RS01525 (HXP32_01530) ctsE 306775..308337 (+) 1563 WP_065980050.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=463905 HXP32_RS01505 WP_002779316.1 303893..304204(+) (ctsR) [Campylobacter coli strain 20A420]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=463905 HXP32_RS01505 WP_002779316.1 303893..304204(+) (ctsR) [Campylobacter coli strain 20A420]
TTGTGTTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACTAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553