Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWQ57_RS22775 Genome accession   NZ_CP058333
Coordinates   4897201..4897698 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain ACR20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4892201..4902698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ57_RS22755 (HWQ57_22555) pchD 4892985..4894628 (+) 1644 WP_003114688.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  HWQ57_RS22760 (HWQ57_22560) pchC 4894625..4895380 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  HWQ57_RS22765 (HWQ57_22565) pchB 4895380..4895685 (+) 306 WP_179118905.1 isochorismate lyase PchB -
  HWQ57_RS22770 (HWQ57_22570) pchA 4895682..4897112 (+) 1431 WP_003118152.1 isochorismate synthase PchA -
  HWQ57_RS22775 (HWQ57_22575) ssb 4897201..4897698 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  HWQ57_RS22780 (HWQ57_22580) - 4897715..4899103 (-) 1389 WP_009316331.1 MFS transporter -
  HWQ57_RS22785 (HWQ57_22585) uvrA 4899317..4902160 (+) 2844 WP_023109609.1 excinuclease ABC subunit UvrA -
  HWQ57_RS22790 (HWQ57_22590) bfr 4902232..4902696 (-) 465 WP_023109608.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=463893 HWQ57_RS22775 WP_003114685.1 4897201..4897698(-) (ssb) [Pseudomonas aeruginosa strain ACR20]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=463893 HWQ57_RS22775 WP_003114685.1 4897201..4897698(-) (ssb) [Pseudomonas aeruginosa strain ACR20]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515