Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B18_RS04320 Genome accession   NZ_CP058332
Coordinates   961867..962364 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain B18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 956867..967364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B18_RS04300 (B18_04285) pchD 957651..959294 (+) 1644 WP_003114688.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  B18_RS04305 (B18_04290) pchC 959291..960046 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  B18_RS04310 (B18_04295) pchB 960046..960351 (+) 306 WP_179118905.1 isochorismate lyase PchB -
  B18_RS04315 (B18_04300) pchA 960348..961778 (+) 1431 WP_003118152.1 isochorismate synthase PchA -
  B18_RS04320 (B18_04305) ssb 961867..962364 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  B18_RS04325 (B18_04310) - 962381..963769 (-) 1389 WP_009316331.1 MFS transporter -
  B18_RS04330 (B18_04315) uvrA 963983..966826 (+) 2844 WP_023109609.1 excinuclease ABC subunit UvrA -
  B18_RS04335 (B18_04320) bfr 966898..967362 (-) 465 WP_023109608.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=463839 B18_RS04320 WP_003114685.1 961867..962364(-) (ssb) [Pseudomonas aeruginosa strain B18]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=463839 B18_RS04320 WP_003114685.1 961867..962364(-) (ssb) [Pseudomonas aeruginosa strain B18]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515