Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWQ50_RS06210 Genome accession   NZ_CP058331
Coordinates   1311711..1312208 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain ACR22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1306711..1317208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ50_RS06195 (HWQ50_06190) bfr 1306713..1307177 (+) 465 WP_023109608.1 bacterioferritin -
  HWQ50_RS06200 (HWQ50_06195) uvrA 1307249..1310092 (-) 2844 WP_023109609.1 excinuclease ABC subunit UvrA -
  HWQ50_RS06205 (HWQ50_06200) - 1310306..1311694 (+) 1389 WP_009316331.1 MFS transporter -
  HWQ50_RS06210 (HWQ50_06205) ssb 1311711..1312208 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  HWQ50_RS06215 (HWQ50_06210) pchA 1312297..1313727 (-) 1431 WP_003118152.1 isochorismate synthase PchA -
  HWQ50_RS06220 (HWQ50_06215) pchB 1313724..1314029 (-) 306 WP_179118905.1 isochorismate lyase PchB -
  HWQ50_RS06225 (HWQ50_06220) pchC 1314029..1314784 (-) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  HWQ50_RS06230 (HWQ50_06225) pchD 1314781..1316424 (-) 1644 WP_003114688.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=463809 HWQ50_RS06210 WP_003114685.1 1311711..1312208(+) (ssb) [Pseudomonas aeruginosa strain ACR22]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=463809 HWQ50_RS06210 WP_003114685.1 1311711..1312208(+) (ssb) [Pseudomonas aeruginosa strain ACR22]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515