Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HXW73_RS00595 Genome accession   NZ_CP058321
Coordinates   126875..127471 (+) Length   198 a.a.
NCBI ID   WP_186254440.1    Uniprot ID   A0A7G7Z487
Organism   Halomonas sp. SH5A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 121875..132471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXW73_RS00585 (HXW73_00585) uvrA 122385..125228 (-) 2844 WP_186254438.1 excinuclease ABC subunit UvrA -
  HXW73_RS00590 (HXW73_00590) - 125421..126800 (+) 1380 WP_186254439.1 MFS transporter -
  HXW73_RS00595 (HXW73_00595) ssb 126875..127471 (+) 597 WP_186254440.1 single-stranded DNA-binding protein Machinery gene
  HXW73_RS00600 (HXW73_00600) - 127516..128406 (+) 891 WP_186254441.1 sugar nucleotide-binding protein -
  HXW73_RS00605 (HXW73_00605) - 128403..129131 (+) 729 WP_186254442.1 lysophospholipid acyltransferase family protein -
  HXW73_RS00610 (HXW73_00610) fabB 129221..130438 (-) 1218 WP_186254443.1 beta-ketoacyl-ACP synthase I -
  HXW73_RS00615 (HXW73_00615) fabA 130451..130966 (-) 516 WP_186254444.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21874.67 Da        Isoelectric Point: 4.6326

>NTDB_id=463751 HXW73_RS00595 WP_186254440.1 126875..127471(+) (ssb) [Halomonas sp. SH5A2]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWMDRQSGQRQERTEWHRVVMFNKTAEIAQQYLKKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDSRGGDYQGGGAAPNNYAQGGQDGGYPQQGGQSQPPQGDQYGGQGNAQPQR
APQQNQPAPPQGQQNNQNNQYGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=463751 HXW73_RS00595 WP_186254440.1 126875..127471(+) (ssb) [Halomonas sp. SH5A2]
ATGGCTCGCGGCATTAACAAGGTTATCTTGATCGGCAACCTCGGACAGGATCCTGAGGTACGATTCACGCCTTCCGGCAC
GGCGGTCGCCAATCTTAATCTGGCCACCACTGATACCTGGATGGATCGCCAGAGCGGTCAGCGCCAGGAGCGCACCGAGT
GGCACCGAGTGGTGATGTTCAACAAAACCGCCGAGATTGCCCAGCAATACCTCAAGAAAGGCTCCAAGGTTTACATCGAA
GGGCGTTTGCAAACCCGCAAATGGCAGGACCAGAACGGCCAGGATCGCTACAGCACCGAAATCGTTGCCAACGATATGCA
GATGCTTGATTCCCGTGGCGGTGATTACCAAGGCGGCGGTGCGGCGCCAAATAACTACGCACAAGGTGGGCAGGATGGCG
GCTACCCTCAACAGGGAGGTCAATCGCAGCCGCCTCAGGGTGATCAATACGGCGGGCAAGGCAATGCCCAGCCGCAGCGA
GCGCCCCAGCAAAACCAGCCCGCACCGCCGCAAGGCCAGCAAAACAACCAAAACAACCAATACGGCGCGCCTGATCCCGG
CAATTTTGATGATTTCGACGATGAGATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7Z487

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.746

100

0.515
  ssb Glaesserella parasuis strain SC1401

47.596

100

0.5
  ssb Neisseria meningitidis MC58

45.918

98.99

0.455
  ssb Neisseria gonorrhoeae MS11

45.876

97.98

0.449