Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VY92_RS10735 Genome accession   NZ_CP058307
Coordinates   2201749..2202261 (-) Length   170 a.a.
NCBI ID   WP_035689391.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2187379..2201005 2201749..2202261 flank 744


Gene organization within MGE regions


Location: 2187379..2202261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS10655 (VY92_010660) - 2187379..2188587 (+) 1209 WP_001339197.1 IS4-like element ISVsa5 family transposase -
  VY92_RS10660 (VY92_010665) - 2188597..2189013 (-) 417 WP_000275180.1 helix-turn-helix domain-containing protein -
  VY92_RS10665 (VY92_010670) tetC 2189101..2189694 (+) 594 WP_000428546.1 tetracyline resistance-associated transcriptional repressor TetC -
  VY92_RS10670 (VY92_010675) tet(B) 2189807..2191012 (-) 1206 WP_001089072.1 tetracycline efflux MFS transporter Tet(B) -
  VY92_RS10675 (VY92_010680) tetR(B) 2191094..2191717 (+) 624 WP_000088605.1 tetracycline resistance transcriptional repressor TetR(B) -
  VY92_RS10680 (VY92_010685) - 2191695..2192381 (-) 687 WP_001284954.1 helix-turn-helix transcriptional regulator -
  VY92_RS10685 (VY92_010690) - 2192389..2192775 (-) 387 WP_000460651.1 hypothetical protein -
  VY92_RS10690 (VY92_010695) - 2192768..2193088 (-) 321 WP_000562370.1 antibiotic biosynthesis monooxygenase -
  VY92_RS10695 (VY92_010700) gltS 2193532..2194737 (+) 1206 WP_000599533.1 sodium/glutamate symporter -
  VY92_RS12665 (VY92_010705) - 2195004..2195093 (+) 90 WP_052894307.1 LysR family transcriptional regulator -
  VY92_RS10705 (VY92_010710) - 2195103..2196311 (-) 1209 WP_001352368.1 IS4-like element ISVsa5 family transposase -
  VY92_RS10710 (VY92_010715) - 2196536..2197468 (-) 933 WP_004235553.1 IS5-like element ISKpn13 family transposase -
  VY92_RS10715 (VY92_010720) - 2197653..2198600 (+) 948 WP_012564931.1 IS30-like element ISAeca1 family transposase -
  VY92_RS10720 (VY92_010725) - 2198758..2199399 (+) 642 WP_011751353.1 type A-2 chloramphenicol O-acetyltransferase CatII -
  VY92_RS10725 (VY92_010730) - 2200073..2201005 (+) 933 WP_004235553.1 IS5-like element ISKpn13 family transposase -
  VY92_RS10730 (VY92_010735) - 2201191..2201673 (-) 483 WP_035689389.1 hypothetical protein -
  VY92_RS10735 (VY92_010740) ssb 2201749..2202261 (-) 513 WP_035689391.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19284.30 Da        Isoelectric Point: 4.8418

>NTDB_id=463645 VY92_RS10735 WP_035689391.1 2201749..2202261(-) (ssb) [Avibacterium paragallinarum strain AVPG2015]
MAGINKVIIVGNLGADPEVRTMPNGEAVSNISVATSESWIDKNTSEKRELTEWHRIVFYRRQAEIVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRPERYQAEQATQVGAAQQGRNQYVQQSQPAYQTPQTQTSASQPVPPPIPD
DGFDDDQIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=463645 VY92_RS10735 WP_035689391.1 2201749..2202261(-) (ssb) [Avibacterium paragallinarum strain AVPG2015]
ATGGCAGGGATTAATAAAGTGATTATCGTGGGTAACCTTGGTGCAGATCCTGAAGTAAGAACAATGCCGAATGGCGAAGC
GGTTTCCAATATAAGTGTGGCAACTAGTGAAAGTTGGATAGATAAGAATACAAGTGAAAAACGTGAATTAACCGAGTGGC
ATCGGATTGTGTTTTATCGTCGTCAAGCTGAGATTGTGGGAGAATATTTACGCAAAGGCTCGAAAGTTTATGTCGAGGGG
CGATTAAGAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGTTATACCACTGAAATTCAAGGCGATGTACTTCAAAT
GCTAGATAGCCGTCCTGAGCGCTATCAAGCAGAGCAGGCAACGCAAGTTGGAGCGGCACAACAAGGTCGTAATCAATATG
TGCAACAGAGTCAGCCTGCCTACCAAACACCACAAACTCAAACTTCAGCATCTCAGCCTGTACCACCCCCTATCCCTGAT
GATGGCTTTGACGATGATCAGATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

60.656

100

0.653
  ssb Vibrio cholerae strain A1552

53.631

100

0.565
  ssb Neisseria meningitidis MC58

47.126

100

0.482
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.476